VASH2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
VASH2 vasohibin 2,FLJ12505 vasohibin 2 NM_024749 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Angiogenesis inhibitor. Inhibits network formation by endothelial cells.

Expression seems reduced in 23 h post infection samples, both Ebola and Marburg in human cells. In bat cells the expression shows a quite heterogenouse pattern.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome37 35 39 33 55 6 30 50 50
Read_Max
batR. aegyptiacusTranscriptome 559 495 486 512 487 658 352 565 715
Read_Max
bat_genomeR. aegyptiacusGenome 1137 1746 1439 822 1445 1316 1055 2531 2641
DESeq
humanH. sapiensGenome 483.02 591.51 791.29 484.65 717.21 62.85 418.55 613.3 936.12
DESeq
batR. aegyptiacusTranscriptome 1155.35 1208.23 1678.17 1305.83 1519.89 1720.46 1190.16 1234.53 1701.43
DESeq
bat_genomeR. aegyptiacusGenome 13600.71 20518.98 23776.11 13616.41 24339.53 28775.15 18469.31 21273.15 25307.31

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 483.02 484.65 418.55 0.0 -0.21 -0.21
7h 591.51 717.21 613.3 0.28 0.05 -0.23
23h 791.29 62.85 936.12 -3.65 0.24 3.9

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 483.02 591.51 791.29 0.29 0.71 0.42
Ebov 484.65 717.21 62.85 0.57 -2.95 -3.51
Marv 418.55 613.3 936.12 0.55 1.16 0.61

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1155.35 1305.83 1190.16 0.18 0.04 -0.13
7h 1208.23 1519.89 1234.53 0.33 0.03 -0.3
23h 1678.17 1720.46 1701.43 0.04 0.02 -0.02

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1155.35 1208.23 1678.17 0.06 0.54 0.47
Ebov 1305.83 1519.89 1720.46 0.22 0.4 0.18
Marv 1190.16 1234.53 1701.43 0.05 0.52 0.46