SAMD4A
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
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| SAMD4A | DKFZP434H0350, hSmaug1, KIAA1053, SAMD4, Smaug, SMG, SMGA,KIAA1053, DKFZP434H0350 | sterile alpha motif domain containing 4A | NM_015589 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Sterile alpha motifs (SAMs) in proteins such as SAMD4A are part of an RNA-binding domain that functions as a posttranscriptional regulator by binding to an RNA sequence motif known as the Smaug recognition element, which was named after the Drosophila Smaug protein.
General low expression in human cells but upregulated after 23 h of Ebola virus infection. In bat cells it is constantely expressed at a distinct higher level.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 43 | 21 | 13 | 25 | 22 | 213 | 35 | 26 | 31 |
Read_Max |  | R. aegyptiacus | Transcriptome | 380 | 310 | 352 | 387 | 403 | 526 | 305 | 427 | 429 |
Read_Max |  | R. aegyptiacus | Genome | 723 | 505 | 445 | 423 | 426 | 489 | 352 | 670 | 755 |
DESeq | | H. sapiens | Genome | 838.2 | 417.11 | 364.37 | 696.82 | 413.98 | 5029.14 | 818.55 | 461.43 | 798.03 |
DESeq | | R. aegyptiacus | Transcriptome | 4802.4 | 4154.59 | 4550.0 | 5071.06 | 5086.6 | 7399.83 | 4343.83 | 4356.77 | 4434.02 |
DESeq | | R. aegyptiacus | Genome | 12647.64 | 13529.64 | 14495.07 | 11435.06 | 14540.99 | 21920.44 | 12820.79 | 12541.23 | 13556.08 |