JUN

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
JUN AP1, p39, c-Jun,c-Jun, AP-1 jun proto-oncogene NM_002228 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene is the putative transforming gene ofavian sarcoma virus 17. It encodes a protein which is highly similar to theviral protein, and which interacts directly with specific target DNAsequences to regulate gene expression. This gene is intronless and is mappedto 1p32-p31, a chromosomal region involved in both translocations anddeletions in human malignancies.

The gene JUN is well expressed in bat cells and moderately expressed in human cellsthroughout all datasets.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome127 109 85 127 105 905 222 278 163
Read_Max
batR. aegyptiacusTranscriptome 455 500 242 294 178 264 243 263 288
Read_Max
bat_genomeR. aegyptiacusGenome 673 467 363 600 286 251 313 470 513
DESeq
humanH. sapiensGenome 1621.61 1299.3 767.46 1722.29 1035.89 9853.31 2410.68 2526.95 2195.27
DESeq
batR. aegyptiacusTranscriptome 2064.38 2358.27 1844.3 1572.29 1289.92 1549.8 1883.19 1449.34 1557.98
DESeq
bat_genomeR. aegyptiacusGenome 4942.35 3680.86 3808.15 5614.83 3090.57 3802.66 4471.14 3314.51 3322.02

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1621.61 1722.29 2410.68 0.09 0.57 0.49
7h 1299.3 1035.89 2526.95 -0.33 0.96 1.29
23h 767.46 9853.31 2195.27 3.68 1.52 -2.17

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1621.61 1299.3 767.46 -0.32 -1.08 -0.76
Ebov 1722.29 1035.89 9853.31 -0.73 2.52 3.25
Marv 2410.68 2526.95 2195.27 0.07 -0.14 -0.2

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2064.38 1572.29 1883.19 -0.39 -0.13 0.26
7h 2358.27 1289.92 1449.34 -0.87 -0.7 0.17
23h 1844.3 1549.8 1557.98 -0.25 -0.24 0.01

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2064.38 2358.27 1844.3 0.19 -0.16 -0.35
Ebov 1572.29 1289.92 1549.8 -0.29 -0.02 0.26
Marv 1883.19 1449.34 1557.98 -0.38 -0.27 0.1