GRASP
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| GRASP | GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
Homo sapiens GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein (GRASP), transcript variant 1, mRNA. This gene encodes a protein that functions as a molecular scaffold, linking receptors, including group 1 metabotropic glutamate receptors, to neuronal proteins. The encoded protein contains conserved domains, including a leucine zipper sequence, PDZ domain and a C-terminal PDZ-binding motif. Alternately spliced transcript variants have been observed for this gene.
High expression within the bat cells with upregulation at 23 h after Ebola and Marburg infection and upregulation within human cells 23 h after Ebola infection. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00300/snapshots//hg19.apg.00300_igv.eps % \caption\igv of gene GRASP. % <- say something about the figure here \endfigure }
\sashimifigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00300/snapshots//hg19.apg.00300_sashimi.eps % \caption\sashimi of gene GRASP. % <- say something about the figure here \endfigure }
\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00300/snapshots//hg19.apg.00300_ucsc.eps % \caption\ucsc of gene GRASP. % <- say something about the figure here \endfigure }
\beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.apg.00300/snapshots//hg19.apg.00300_rae.eps % \caption % <- say something about the figure here \endfigure
\setcounterfigure0 \enddocument
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 5 | 4 | 14 | 7 | 3 | 54 | 4 | 6 | 10 |
Read_Max |  | R. aegyptiacus | Transcriptome | 20 | 11 | 25 | 14 | 21 | 25 | 8 | 14 | 53 |
Read_Max |  | R. aegyptiacus | Genome | 22 | 11 | 18 | 13 | 18 | 15 | 7 | 19 | 60 |
DESeq | | H. sapiens | Genome | 22.31 | 22.42 | 37.73 | 32.94 | 27.83 | 339.19 | 22.05 | 41.77 | 69.5 |
DESeq | | R. aegyptiacus | Transcriptome | 69.89 | 43.66 | 126.82 | 53.19 | 88.61 | 117.77 | 37.71 | 72.88 | 287.03 |
DESeq | | R. aegyptiacus | Genome | 79.06 | 54.76 | 194.15 | 66.16 | 123.89 | 138.37 | 44.98 | 88.81 | 338.2 |