STX3
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| STX3 | STX3A | syntaxin 3 | NM_004177 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The gene is a member of the syntaxin family. The encoded protein is targeted to the apical membrane of epithelial cells where it forms clusters and is important in establishing and maintaining polarity necessary for protein trafficking involving vesicle fusion and exocytosis. Gene is expressed in bat and human and upregulated in both upon EBOV infection. There is a pseudogene with wrong mapping in an intron.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 565 | 508 | 425 | 564 | 627 | 1565 | 726 | 823 | 534 |
Read_Max |  | R. aegyptiacus | Transcriptome | 27 | 16 | 32 | 20 | 19 | 63 | 19 | 46 | 42 |
Read_Max |  | R. aegyptiacus | Genome | 31 | 25 | 34 | 22 | 19 | 38 | 24 | 63 | 49 |
DESeq | | H. sapiens | Genome | 3153.94 | 3224.82 | 2774.95 | 3385.41 | 3541.4 | 16709.26 | 3433.5 | 3637.25 | 7874.48 |
DESeq | | R. aegyptiacus | Transcriptome | 101.82 | 78.15 | 163.46 | 104.47 | 115.98 | 311.53 | 104.45 | 152.2 | 206.56 |
DESeq | | R. aegyptiacus | Genome | 276.72 | 364.16 | 470.86 | 303.16 | 376.14 | 808.05 | 304.75 | 440.09 | 562.52 |