TRIM45

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TRIM45 NM_025188, NP_079464, Q53GN0, Q5T2K4, Q5T2K5, Q8IYV6, Q9H8W5, RNF99, TRI45_HUMAN,FLJ13181 tripartite motif containing 45 NM_025188 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a member of the tripartite motif family. The encodedprotein may function as a transcriptional repressor of themitogen-activated protein kinase pathway. Alternatively splicedtranscript variants have been described.

The gene was only very low expressed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome20 14 16 11 19 10 15 17 6
Read_Max
batR. aegyptiacusTranscriptome 29 46 35 29 29 30 14 54 37
Read_Max
bat_genomeR. aegyptiacusGenome 43 42 36 37 25 23 18 55 49
DESeq
humanH. sapiensGenome 147.13 137.66 161.84 148.15 149.77 31.27 163.28 150.48 68.42
DESeq
batR. aegyptiacusTranscriptome 169.87 263.32 302.72 239.07 247.4 226.84 127.81 255.47 188.19
DESeq
bat_genomeR. aegyptiacusGenome 318.83 443.56 540.04 451.28 408.5 362.9 238.4 404.4 377.58

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 147.13 148.15 163.28 0.01 0.15 0.14
7h 137.66 149.77 150.48 0.12 0.13 0.01
23h 161.84 31.27 68.42 -2.37 -1.24 1.13

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 147.13 137.66 161.84 -0.1 0.14 0.23
Ebov 148.15 149.77 31.27 0.02 -2.24 -2.26
Marv 163.28 150.48 68.42 -0.12 -1.25 -1.14

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 169.87 239.07 127.81 0.49 -0.41 -0.9
7h 263.32 247.4 255.47 -0.09 -0.04 0.05
23h 302.72 226.84 188.19 -0.42 -0.69 -0.27

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 169.87 263.32 302.72 0.63 0.83 0.2
Ebov 239.07 247.4 226.84 0.05 -0.08 -0.13
Marv 127.81 255.47 188.19 1.0 0.56 -0.44