SLC5A3

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
SLC5A3 BCW2, SMIT, SMIT1, SMIT2,SMIT solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 pdf

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Description

Homo sapiens solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 (SLC5A3), mRNA.

The gene is expressed relatively highly in bat cells and human cells. While there is upregulation in Marburg and Ebola infected cells in bat cells, we see a downregulation in Ebola infected cells in human cells after 23 h.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome126 164 180 79 147 132 133 195 97
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 619 455 357 475 342 440 438 565 869
DESeq
humanH. sapiensGenome 5090.16 6506.77 7632.84 3297.57 4559.21 1484.04 3095.78 3963.38 4823.38
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 10578.23 10650.12 11321.8 8293.87 9405.66 17365.87 12734.2 9533.59 12508.96

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 5090.16 3297.57 3095.78 -0.63 -0.72 -0.09
7h 6506.77 4559.21 3963.38 -0.51 -0.72 -0.2
23h 7632.84 1484.04 4823.38 -2.36 -0.66 1.7

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 5090.16 6506.77 7632.84 0.35 0.58 0.23
Ebov 3297.57 4559.21 1484.04 0.47 -1.15 -1.62
Marv 3095.78 3963.38 4823.38 0.36 0.64 0.28

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA