UBC

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
UBC UBE2N, HEL-S-71, UBC13, UBCHBEN,_UBC13, UbcH-ben, UbcH13 ubiquitin C NM_021009 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens mRNA for ubiquitin C variant protein. Very highly expressed gene that is upregulated upon EBOV and MARV infection in bat and human.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2540 7848 2546 3158 3944 12040 3263 3855 4245
Read_Max
batR. aegyptiacusTranscriptome 901 526 494 644 441 774 425 554 541
Read_Max
bat_genomeR. aegyptiacusGenome 856 1116 664 648 719 1221 593 1515 1449
DESeq
humanH. sapiensGenome 11936.92 13986.52 12415.28 15002.12 14846.29 63279.75 15990.69 17634.67 20079.95
DESeq
batR. aegyptiacusTranscriptome 2039.18 1729.24 2547.9 2336.87 2055.39 3352.67 2223.59 2019.43 2118.67
DESeq
bat_genomeR. aegyptiacusGenome 1462.68 3742.92 1931.41 1841.66 2052.57 4275.22 2080.38 2706.32 2162.74

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 11936.92 15002.12 15990.69 0.33 0.42 0.09
7h 13986.52 14846.29 17634.67 0.09 0.33 0.25
23h 12415.28 63279.75 20079.95 2.35 0.69 -1.66

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 11936.92 13986.52 12415.28 0.23 0.06 -0.17
Ebov 15002.12 14846.29 63279.75 -0.02 2.08 2.09
Marv 15990.69 17634.67 20079.95 0.14 0.33 0.19

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2039.18 2336.87 2223.59 0.2 0.12 -0.07
7h 1729.24 2055.39 2019.43 0.25 0.22 -0.03
23h 2547.9 3352.67 2118.67 0.4 -0.27 -0.66

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2039.18 1729.24 2547.9 -0.24 0.32 0.56
Ebov 2336.87 2055.39 3352.67 -0.19 0.52 0.71
Marv 2223.59 2019.43 2118.67 -0.14 -0.07 0.07