UBC

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
UBC	UBE2N, HEL-S-71, UBC13, UBCHBEN,_UBC13, UbcH-ben, UbcH13	ubiquitin C	NM_021009	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens mRNA for ubiquitin C variant protein. Very highly expressed gene that is upregulated upon EBOV and MARV infection in bat and human.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	2540	7848	2546	3158	3944	12040	3263	3855	4245
Read_Max		R. aegyptiacus	Transcriptome	901	526	494	644	441	774	425	554	541
Read_Max		R. aegyptiacus	Genome	856	1116	664	648	719	1221	593	1515	1449
DESeq		H. sapiens	Genome	11936.92	13986.52	12415.28	15002.12	14846.29	63279.75	15990.69	17634.67	20079.95
DESeq		R. aegyptiacus	Transcriptome	2039.18	1729.24	2547.9	2336.87	2055.39	3352.67	2223.59	2019.43	2118.67
DESeq		R. aegyptiacus	Genome	1462.68	3742.92	1931.41	1841.66	2052.57	4275.22	2080.38	2706.32	2162.74

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	11936.92	15002.12	15990.69	0.33	0.42	0.09
7h	13986.52	14846.29	17634.67	0.09	0.33	0.25
23h	12415.28	63279.75	20079.95	2.35	0.69	-1.66

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	11936.92	13986.52	12415.28	0.23	0.06	-0.17
Ebov	15002.12	14846.29	63279.75	-0.02	2.08	2.09
Marv	15990.69	17634.67	20079.95	0.14	0.33	0.19

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	2039.18	2336.87	2223.59	0.2	0.12	-0.07
7h	1729.24	2055.39	2019.43	0.25	0.22	-0.03
23h	2547.9	3352.67	2118.67	0.4	-0.27	-0.66

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	2039.18	1729.24	2547.9	-0.24	0.32	0.56
Ebov	2336.87	2055.39	3352.67	-0.19	0.52	0.71
Marv	2223.59	2019.43	2118.67	-0.14	-0.07	0.07