CPEB4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CPEB4 ENSG00000113742,KIAA1673 cytoplasmic polyadenylation element binding protein 4 NM_030627 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

CPEB4 (cytoplasmic polyadenylation element binding protein 4) is a protein-coding gene. GO annotations related to this gene include RNA binding and nucleotide binding. An important paralog of this gene is CPEB2

Overall gene expression is constant throughout all samples

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome127 96 81 88 151 380 118 128 131
Read_Max
batR. aegyptiacusTranscriptome 127 138 138 133 119 174 98 131 177
Read_Max
bat_genomeR. aegyptiacusGenome 152 142 125 117 108 133 125 198 251
DESeq
humanH. sapiensGenome 3113.35 2340.59 2284.5 2898.34 2881.28 9908.58 2769.46 2166.44 4100.3
DESeq
batR. aegyptiacusTranscriptome 1450.24 1385.23 1839.41 1523.76 1553.84 2315.86 1508.31 1403.08 1790.65
DESeq
bat_genomeR. aegyptiacusGenome 3563.89 3841.49 4463.11 3282.4 4330.6 6491.8 4147.27 3676.1 4737.31

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3113.35 2898.34 2769.46 -0.1 -0.17 -0.07
7h 2340.59 2881.28 2166.44 0.3 -0.11 -0.41
23h 2284.5 9908.58 4100.3 2.12 0.84 -1.27

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3113.35 2340.59 2284.5 -0.41 -0.45 -0.03
Ebov 2898.34 2881.28 9908.58 -0.01 1.77 1.78
Marv 2769.46 2166.44 4100.3 -0.35 0.57 0.92

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1450.24 1523.76 1508.31 0.07 0.06 -0.01
7h 1385.23 1553.84 1403.08 0.17 0.02 -0.15
23h 1839.41 2315.86 1790.65 0.33 -0.04 -0.37

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1450.24 1385.23 1839.41 -0.07 0.34 0.41
Ebov 1523.76 1553.84 2315.86 0.03 0.6 0.58
Marv 1508.31 1403.08 1790.65 -0.1 0.25 0.35