JMJD1C

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
JMJD1C	TRIP8,DKFZp761F0118, KIAA1380, FLJ14374	jumonji domain containing 1C	NM_004241	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens jumonji domain containing 1C (JMJD1C), transcript variant 2, mRNA.

This gene is expressed in human cells and bat cells. In human cells, different isoforms are expressed upon Ebola and Marburg infection.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	97	102	184	82	174	601	116	120	188
Read_Max		R. aegyptiacus	Transcriptome	300	199	204	276	210	440	203	257	257
Read_Max		R. aegyptiacus	Genome	339	297	183	195	180	267	181	320	292
DESeq		H. sapiens	Genome	3887.63	3562.4	5083.27	3718.49	4129.16	15674.95	3708.94	3251.16	5299.64
DESeq		R. aegyptiacus	Transcriptome	7405.16	5484.35	6572.87	6795.26	6084.22	12727.6	7114.84	6062.89	5744.34
DESeq		R. aegyptiacus	Genome	8717.65	7963.18	7839.45	6861.04	7285.01	14458.72	8451.98	7001.71	6805.01

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	3887.63	3718.49	3708.94	-0.06	-0.07	-0.0
7h	3562.4	4129.16	3251.16	0.21	-0.13	-0.34
23h	5083.27	15674.95	5299.64	1.62	0.06	-1.56

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	3887.63	3562.4	5083.27	-0.13	0.39	0.51
Ebov	3718.49	4129.16	15674.95	0.15	2.08	1.92
Marv	3708.94	3251.16	5299.64	-0.19	0.51	0.7

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	7405.16	6795.26	7114.84	-0.12	-0.06	0.07
7h	5484.35	6084.22	6062.89	0.15	0.14	-0.01
23h	6572.87	12727.6	5744.34	0.95	-0.19	-1.15

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	7405.16	5484.35	6572.87	-0.43	-0.17	0.26
Ebov	6795.26	6084.22	12727.6	-0.16	0.91	1.06
Marv	7114.84	6062.89	5744.34	-0.23	-0.31	-0.08