JMJD1C

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
JMJD1C TRIP8,DKFZp761F0118, KIAA1380, FLJ14374 jumonji domain containing 1C NM_004241 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens jumonji domain containing 1C (JMJD1C), transcript variant 2, mRNA.

This gene is expressed in human cells and bat cells. In human cells, different isoforms are expressed upon Ebola and Marburg infection.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome97 102 184 82 174 601 116 120 188
Read_Max
batR. aegyptiacusTranscriptome 300 199 204 276 210 440 203 257 257
Read_Max
bat_genomeR. aegyptiacusGenome 339 297 183 195 180 267 181 320 292
DESeq
humanH. sapiensGenome 3887.63 3562.4 5083.27 3718.49 4129.16 15674.95 3708.94 3251.16 5299.64
DESeq
batR. aegyptiacusTranscriptome 7405.16 5484.35 6572.87 6795.26 6084.22 12727.6 7114.84 6062.89 5744.34
DESeq
bat_genomeR. aegyptiacusGenome 8717.65 7963.18 7839.45 6861.04 7285.01 14458.72 8451.98 7001.71 6805.01

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3887.63 3718.49 3708.94 -0.06 -0.07 -0.0
7h 3562.4 4129.16 3251.16 0.21 -0.13 -0.34
23h 5083.27 15674.95 5299.64 1.62 0.06 -1.56

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3887.63 3562.4 5083.27 -0.13 0.39 0.51
Ebov 3718.49 4129.16 15674.95 0.15 2.08 1.92
Marv 3708.94 3251.16 5299.64 -0.19 0.51 0.7

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7405.16 6795.26 7114.84 -0.12 -0.06 0.07
7h 5484.35 6084.22 6062.89 0.15 0.14 -0.01
23h 6572.87 12727.6 5744.34 0.95 -0.19 -1.15

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7405.16 5484.35 6572.87 -0.43 -0.17 0.26
Ebov 6795.26 6084.22 12727.6 -0.16 0.91 1.06
Marv 7114.84 6062.89 5744.34 -0.23 -0.31 -0.08