AP3M2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
AP3M2 AP47B, CLA20,CLA20, AP47B adaptor-related protein complex 3, mu 2 subunit pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. Could be of interest the last exon and the downstream region of the gene.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome79 100 96 69 89 31 100 110 55
Read_Max
batR. aegyptiacusTranscriptome 5 7 4 7 5 7 3 10 10
Read_Max
bat_genomeR. aegyptiacusGenome 109 95 61 93 57 41 66 86 49
DESeq
humanH. sapiensGenome 893.0 1068.81 1314.51 971.72 1113.93 323.4 1102.77 1134.48 964.39
DESeq
batR. aegyptiacusTranscriptome 19.48 27.32 20.54 26.64 19.62 21.53 8.79 34.05 30.74
DESeq
bat_genomeR. aegyptiacusGenome 115.16 133.25 135.01 142.2 117.19 116.18 116.95 107.05 83.05

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 893.0 971.72 1102.77 0.12 0.3 0.18
7h 1068.81 1113.93 1134.48 0.06 0.09 0.03
23h 1314.51 323.4 964.39 -2.02 -0.45 1.58

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 893.0 1068.81 1314.51 0.26 0.56 0.3
Ebov 971.72 1113.93 323.4 0.2 -1.59 -1.78
Marv 1102.77 1134.48 964.39 0.04 -0.19 -0.23

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 19.48 26.64 8.79 0.45 -1.15 -1.6
7h 27.32 19.62 34.05 -0.48 0.32 0.8
23h 20.54 21.53 30.74 0.07 0.58 0.51

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 19.48 27.32 20.54 0.49 0.08 -0.41
Ebov 26.64 19.62 21.53 -0.44 -0.31 0.13
Marv 8.79 34.05 30.74 1.95 1.81 -0.15