GNA13

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GNA13 AK302400, B2R977,G13, MGC46138 guanine nucleotide binding protein (G protein), alpha 13 NM_006572 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Guanine nucleotide-binding proteins (G proteins), here GNA13, are involved as modulators or transducers in various transmembrane signaling systems.

This gene shows an upregulation for the Ebola 23 h probe, which is also the one with the highest expression. Within the other samples the expression varies only slightly.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome268 241 150 269 246 814 395 433 365
Read_Max
batR. aegyptiacusTranscriptome 369 339 191 312 219 382 289 320 285
Read_Max
bat_genomeR. aegyptiacusGenome 391 325 186 305 197 239 249 438 398
DESeq
humanH. sapiensGenome 4491.43 3069.8 3582.12 3926.09 3345.48 13178.64 4924.75 4558.1 9273.89
DESeq
batR. aegyptiacusTranscriptome 1952.65 1741.95 1367.9 1765.49 1633.78 2483.96 1843.14 1723.64 1452.14
DESeq
bat_genomeR. aegyptiacusGenome 5800.02 5746.26 4392.82 5294.89 5702.33 8653.56 6124.2 5724.28 4879.44

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 4491.43 3926.09 4924.75 -0.19 0.13 0.33
7h 3069.8 3345.48 4558.1 0.12 0.57 0.45
23h 3582.12 13178.64 9273.89 1.88 1.37 -0.51

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 4491.43 3069.8 3582.12 -0.55 -0.33 0.22
Ebov 3926.09 3345.48 13178.64 -0.23 1.75 1.98
Marv 4924.75 4558.1 9273.89 -0.11 0.91 1.02

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1952.65 1765.49 1843.14 -0.15 -0.08 0.06
7h 1741.95 1633.78 1723.64 -0.09 -0.02 0.08
23h 1367.9 2483.96 1452.14 0.86 0.09 -0.77

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1952.65 1741.95 1367.9 -0.16 -0.51 -0.35
Ebov 1765.49 1633.78 2483.96 -0.11 0.49 0.6
Marv 1843.14 1723.64 1452.14 -0.1 -0.34 -0.25