RBPMS

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RBPMS HERMES RNA binding protein with multiple splicing pdf

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Description

This gene encodes a member of the RNA recognition motif family of RNA-binding proteins. The RNA recognition motif is between 80-100 amino acids in length and family members contain one to four copies of the motif. The RNA recognition motif consists of two short stretches of conserved sequence, as well as a few highly conserved hydrophobic residues. The encoded protein has a single, putative RNA recognition motif in its N-terminus. The gene is upregulated exclusively in human EBOV 23h. Bat homologs show slightly decreasing expression in wt, EBOV and MARV.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome128 145 114 99 157 525 143 153 146
Read_Max
batR. aegyptiacusTranscriptome 218 180 127 155 138 144 141 203 160
Read_Max
bat_genomeR. aegyptiacusGenome 236 176 119 194 123 88 132 243 186
DESeq
humanH. sapiensGenome 2152.35 1906.12 1906.23 1951.57 1946.39 7368.85 1964.18 2050.53 2668.26
DESeq
batR. aegyptiacusTranscriptome 578.18 581.01 577.57 568.71 570.45 582.28 613.94 628.92 622.04
DESeq
bat_genomeR. aegyptiacusGenome 3154.82 2704.29 2870.9 2618.81 2414.2 2877.12 2712.37 2623.86 2671.32

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2152.35 1951.57 1964.18 -0.14 -0.13 0.01
7h 1906.12 1946.39 2050.53 0.03 0.11 0.08
23h 1906.23 7368.85 2668.26 1.95 0.49 -1.47

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2152.35 1906.12 1906.23 -0.18 -0.18 0.0
Ebov 1951.57 1946.39 7368.85 -0.0 1.92 1.92
Marv 1964.18 2050.53 2668.26 0.06 0.44 0.38

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 578.18 568.71 613.94 -0.02 0.09 0.11
7h 581.01 570.45 628.92 -0.03 0.11 0.14
23h 577.57 582.28 622.04 0.01 0.11 0.1

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 578.18 581.01 577.57 0.01 -0.0 -0.01
Ebov 568.71 570.45 582.28 0.0 0.03 0.03
Marv 613.94 628.92 622.04 0.03 0.02 -0.02