PCF11

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PCF11 KIAA0824 PCF11 cleavage and polyadenylation factor subunit NM_015885 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

PCF11 is a component of pre-mRNA cleavage complex II.

Its expression shows an heterogeneous picture across the different samples. In human cells Ebola infected cells it is induced over the time course. In bat cells it is generally repressed in the course of the infection.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome103 140 170 101 213 562 153 168 163
Read_Max
batR. aegyptiacusTranscriptome 219 166 111 173 112 174 143 195 147
Read_Max
bat_genomeR. aegyptiacusGenome 247 183 94 176 95 98 124 236 164
DESeq
humanH. sapiensGenome 2570.44 3033.08 3385.54 2726.09 3551.97 10438.89 2742.27 3079.3 3624.04
DESeq
batR. aegyptiacusTranscriptome 2955.77 2614.24 2299.93 3169.21 2529.56 3130.68 2921.07 3089.37 2010.21
DESeq
bat_genomeR. aegyptiacusGenome 4202.42 4386.36 3241.33 3923.27 3605.11 4476.25 3996.59 4099.53 2947.01

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2570.44 2726.09 2742.27 0.08 0.09 0.01
7h 3033.08 3551.97 3079.3 0.23 0.02 -0.21
23h 3385.54 10438.89 3624.04 1.62 0.1 -1.53

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2570.44 3033.08 3385.54 0.24 0.4 0.16
Ebov 2726.09 3551.97 10438.89 0.38 1.94 1.56
Marv 2742.27 3079.3 3624.04 0.17 0.4 0.23

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2955.77 3169.21 2921.07 0.1 -0.02 -0.12
7h 2614.24 2529.56 3089.37 -0.05 0.24 0.29
23h 2299.93 3130.68 2010.21 0.44 -0.19 -0.64

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2955.77 2614.24 2299.93 -0.18 -0.36 -0.18
Ebov 3169.21 2529.56 3130.68 -0.33 -0.02 0.31
Marv 2921.07 3089.37 2010.21 0.08 -0.54 -0.62