TMCO3

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TMCO3 TMCO3, C13orf11,FLJ20623 transmembrane and coiled-coil domains 3 NM_017905 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The probable Na$^+$/H$^+$ antiporter TMCO3 did show to be upregulated in human cells Ebola infected cells at late infection stage. In contrast, bat cells homologs show equal expression over the time course.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome217 198 215 220 288 798 258 369 220
Read_Max
batR. aegyptiacusTranscriptome 23 19 15 23 16 15 14 27 22
Read_Max
bat_genomeR. aegyptiacusGenome 222 204 108 206 133 48 124 305 199
DESeq
humanH. sapiensGenome 2325.88 2411.98 2431.43 2540.16 2458.55 9141.4 2441.38 2490.18 2712.84
DESeq
batR. aegyptiacusTranscriptome 154.75 151.68 163.46 174.98 146.65 81.84 137.83 195.99 133.08
DESeq
bat_genomeR. aegyptiacusGenome 2615.12 2778.21 2450.25 2589.18 2693.23 1422.9 2632.53 3106.76 2083.97

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2325.88 2540.16 2441.38 0.13 0.07 -0.06
7h 2411.98 2458.55 2490.18 0.03 0.05 0.02
23h 2431.43 9141.4 2712.84 1.91 0.16 -1.75

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2325.88 2411.98 2431.43 0.05 0.06 0.01
Ebov 2540.16 2458.55 9141.4 -0.05 1.85 1.89
Marv 2441.38 2490.18 2712.84 0.03 0.15 0.12

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 154.75 174.98 137.83 0.18 -0.17 -0.34
7h 151.68 146.65 195.99 -0.05 0.37 0.42
23h 163.46 81.84 133.08 -1.0 -0.3 0.7

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 154.75 151.68 163.46 -0.03 0.08 0.11
Ebov 174.98 146.65 81.84 -0.25 -1.1 -0.84
Marv 137.83 195.99 133.08 0.51 -0.05 -0.56