HNRNPR

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
HNRNPR HNRNPR, HNRPR, hnRNP-R,hnRNP-R heterogeneous nuclear ribonucleoprotein R NM_005826 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes an RNA-binding protein that is a member of thespliceosome C complex, which functions in pre-mRNA processing andtransport. The encoded protein also promotes transcription at the c-fosgene. Alternative splicing results in multiple transcript variants.

For human cells Ebola and Marburg infected cells, a slight downregulation at 23hours can be observed. In bat cells homologs show constant expression levels.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome921 785 836 1056 1214 305 1280 1075 725
Read_Max
batR. aegyptiacusTranscriptome 1037 856 649 998 831 548 834 1153 879
Read_Max
bat_genomeR. aegyptiacusGenome 1148 1062 577 969 709 349 708 1372 1110
DESeq
humanH. sapiensGenome 9043.77 8553.65 8976.13 10558.02 8553.24 2843.39 10611.67 8636.38 7726.6
DESeq
batR. aegyptiacusTranscriptome 8150.36 8223.76 6994.3 7861.1 7702.77 5056.74 8034.8 8093.71 6959.31
DESeq
bat_genomeR. aegyptiacusGenome 9562.43 9164.27 7591.75 10209.59 9135.56 6087.13 9397.71 9095.09 8067.04

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 9043.77 10558.02 10611.67 0.22 0.23 0.01
7h 8553.65 8553.24 8636.38 0.0 0.01 0.01
23h 8976.13 2843.39 7726.6 -1.66 -0.22 1.44

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 9043.77 8553.65 8976.13 -0.08 -0.01 0.07
Ebov 10558.02 8553.24 2843.39 -0.3 -1.89 -1.59
Marv 10611.67 8636.38 7726.6 -0.3 -0.46 -0.16

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8150.36 7861.1 8034.8 -0.05 -0.02 0.03
7h 8223.76 7702.77 8093.71 -0.09 -0.02 0.07
23h 6994.3 5056.74 6959.31 -0.47 -0.01 0.46

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8150.36 8223.76 6994.3 0.01 -0.22 -0.23
Ebov 7861.1 7702.77 5056.74 -0.03 -0.64 -0.61
Marv 8034.8 8093.71 6959.31 0.01 -0.21 -0.22