LGR4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LGR4 leucine-rich repeat containing G protein-coupled receptor 4 NM_018490 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Function unknown. Interesting differential splicing for ebola samples.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome748 983 563 954 855 231 1217 1251 474
Read_Max
batR. aegyptiacusTranscriptome 1120 856 802 1260 988 740 956 1359 908
Read_Max
bat_genomeR. aegyptiacusGenome 1224 1268 695 830 797 450 780 1612 1000
DESeq
humanH. sapiensGenome 14595.66 13130.84 12348.76 15324.94 13567.52 4321.17 15111.73 11089.59 11810.67
DESeq
batR. aegyptiacusTranscriptome 12860.19 11158.32 11715.54 14615.07 15172.38 9591.5 13926.1 14191.13 10291.95
DESeq
bat_genomeR. aegyptiacusGenome 19573.47 21291.11 16690.92 17751.0 22870.7 14654.53 21458.32 20734.74 15408.03

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 14595.66 15324.94 15111.73 0.07 0.05 -0.02
7h 13130.84 13567.52 11089.59 0.05 -0.24 -0.29
23h 12348.76 4321.17 11810.67 -1.51 -0.06 1.45

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 14595.66 13130.84 12348.76 -0.15 -0.24 -0.09
Ebov 15324.94 13567.52 4321.17 -0.18 -1.83 -1.65
Marv 15111.73 11089.59 11810.67 -0.45 -0.36 0.09

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 12860.19 14615.07 13926.1 0.18 0.11 -0.07
7h 11158.32 15172.38 14191.13 0.44 0.35 -0.1
23h 11715.54 9591.5 10291.95 -0.29 -0.19 0.1

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 12860.19 11158.32 11715.54 -0.2 -0.13 0.07
Ebov 14615.07 15172.38 9591.5 0.05 -0.61 -0.66
Marv 13926.1 14191.13 10291.95 0.03 -0.44 -0.46