TRIM71

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TRIM71 LIN-41, LIN41,LIN41, LIN-41 tripartite motif containing 71, E3 ubiquitin protein ligase NM_001039111 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens tripartite motif containing 71, E3 ubiquitin protein ligase (TRIM71), mRNA. Downregulated upon EBOV 23h in human, bat homolog not expressed.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome620 598 748 506 822 283 694 794 820
Read_Max
batR. aegyptiacusTranscriptome 2 2 2 2 NA NA NA NA 3
Read_Max
bat_genomeR. aegyptiacusGenome 0 0 1 0 0 1 2 0 1
DESeq
humanH. sapiensGenome 8875.31 8492.46 8383.42 7788.44 8593.89 3178.95 7822.16 7887.39 11334.42
DESeq
batR. aegyptiacusTranscriptome 4.36 4.63 3.44 7.41 1.0 1.0 1.0 1.0 4.5
DESeq
bat_genomeR. aegyptiacusGenome 0.0 0.0 2.23 0.0 0.0 1.31 2.25 0.0 0.86

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8875.31 7788.44 7822.16 -0.19 -0.18 0.01
7h 8492.46 8593.89 7887.39 0.02 -0.11 -0.12
23h 8383.42 3178.95 11334.42 -1.4 0.44 1.83

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8875.31 8492.46 8383.42 -0.06 -0.08 -0.02
Ebov 7788.44 8593.89 3178.95 0.14 -1.29 -1.43
Marv 7822.16 7887.39 11334.42 0.01 0.54 0.52

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 4.36 7.41 1.0 0.77 -2.12 -2.89
7h 4.63 1.0 1.0 -2.21 -2.21 0.0
23h 3.44 1.0 4.5 -1.78 0.39 2.17

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 4.36 4.63 3.44 0.09 -0.34 -0.43
Ebov 7.41 1.0 1.0 -2.89 -2.89 0.0
Marv 1.0 1.0 4.5 0.0 2.17 2.17