TRIM71

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
TRIM71	LIN-41, LIN41,LIN41, LIN-41	tripartite motif containing 71, E3 ubiquitin protein ligase	NM_001039111	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens tripartite motif containing 71, E3 ubiquitin protein ligase (TRIM71), mRNA. Downregulated upon EBOV 23h in human, bat homolog not expressed.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	620	598	748	506	822	283	694	794	820
Read_Max		R. aegyptiacus	Transcriptome	2	2	2	2	NA	NA	NA	NA	3
Read_Max		R. aegyptiacus	Genome	0	0	1	0	0	1	2	0	1
DESeq		H. sapiens	Genome	8875.31	8492.46	8383.42	7788.44	8593.89	3178.95	7822.16	7887.39	11334.42
DESeq		R. aegyptiacus	Transcriptome	4.36	4.63	3.44	7.41	1.0	1.0	1.0	1.0	4.5
DESeq		R. aegyptiacus	Genome	0.0	0.0	2.23	0.0	0.0	1.31	2.25	0.0	0.86

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	8875.31	7788.44	7822.16	-0.19	-0.18	0.01
7h	8492.46	8593.89	7887.39	0.02	-0.11	-0.12
23h	8383.42	3178.95	11334.42	-1.4	0.44	1.83

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	8875.31	8492.46	8383.42	-0.06	-0.08	-0.02
Ebov	7788.44	8593.89	3178.95	0.14	-1.29	-1.43
Marv	7822.16	7887.39	11334.42	0.01	0.54	0.52

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	4.36	7.41	1.0	0.77	-2.12	-2.89
7h	4.63	1.0	1.0	-2.21	-2.21	0.0
23h	3.44	1.0	4.5	-1.78	0.39	2.17

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	4.36	4.63	3.44	0.09	-0.34	-0.43
Ebov	7.41	1.0	1.0	-2.89	-2.89	0.0
Marv	1.0	1.0	4.5	0.0	2.17	2.17