ARID1A

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ARID1A B120, BAF250,hOSA1,hELD, P270, C10rf4, BAF250a AT rich interactive domain 1A (SWI-like) NM_139135 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).More related to neural related genes.The expressions patterns seem not to change during infection.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome183 160 146 137 185 392 174 188 119
Read_Max
batR. aegyptiacusTranscriptome 273 284 109 149 146 175 203 186 168
Read_Max
bat_genomeR. aegyptiacusGenome 310 192 95 271 122 110 179 231 196
DESeq
humanH. sapiensGenome 6946.2 6328.29 4922.43 6148.14 5340.46 13489.2 5994.06 5790.7 3878.48
DESeq
batR. aegyptiacusTranscriptome 6807.82 7051.03 4639.17 5117.75 5037.32 5489.17 5716.54 4477.4 4034.28
DESeq
bat_genomeR. aegyptiacusGenome 7745.68 5795.55 5012.07 8378.8 5731.35 6083.21 6497.55 4863.14 4426.51

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6946.2 6148.14 5994.06 -0.18 -0.21 -0.04
7h 6328.29 5340.46 5790.7 -0.24 -0.13 0.12
23h 4922.43 13489.2 3878.48 1.45 -0.34 -1.8

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6946.2 6328.29 4922.43 -0.13 -0.5 -0.36
Ebov 6148.14 5340.46 13489.2 -0.2 1.13 1.34
Marv 5994.06 5790.7 3878.48 -0.05 -0.63 -0.58

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6807.82 5117.75 5716.54 -0.41 -0.25 0.16
7h 7051.03 5037.32 4477.4 -0.49 -0.66 -0.17
23h 4639.17 5489.17 4034.28 0.24 -0.2 -0.44

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6807.82 7051.03 4639.17 0.05 -0.55 -0.6
Ebov 5117.75 5037.32 5489.17 -0.02 0.1 0.12
Marv 5716.54 4477.4 4034.28 -0.35 -0.5 -0.15