ARID1A

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
ARID1A	B120, BAF250,hOSA1,hELD, P270, C10rf4, BAF250a	AT rich interactive domain 1A (SWI-like)	NM_139135	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).More related to neural related genes.The expressions patterns seem not to change during infection.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	183	160	146	137	185	392	174	188	119
Read_Max		R. aegyptiacus	Transcriptome	273	284	109	149	146	175	203	186	168
Read_Max		R. aegyptiacus	Genome	310	192	95	271	122	110	179	231	196
DESeq		H. sapiens	Genome	6946.2	6328.29	4922.43	6148.14	5340.46	13489.2	5994.06	5790.7	3878.48
DESeq		R. aegyptiacus	Transcriptome	6807.82	7051.03	4639.17	5117.75	5037.32	5489.17	5716.54	4477.4	4034.28
DESeq		R. aegyptiacus	Genome	7745.68	5795.55	5012.07	8378.8	5731.35	6083.21	6497.55	4863.14	4426.51

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	6946.2	6148.14	5994.06	-0.18	-0.21	-0.04
7h	6328.29	5340.46	5790.7	-0.24	-0.13	0.12
23h	4922.43	13489.2	3878.48	1.45	-0.34	-1.8

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	6946.2	6328.29	4922.43	-0.13	-0.5	-0.36
Ebov	6148.14	5340.46	13489.2	-0.2	1.13	1.34
Marv	5994.06	5790.7	3878.48	-0.05	-0.63	-0.58

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	6807.82	5117.75	5716.54	-0.41	-0.25	0.16
7h	7051.03	5037.32	4477.4	-0.49	-0.66	-0.17
23h	4639.17	5489.17	4034.28	0.24	-0.2	-0.44

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	6807.82	7051.03	4639.17	0.05	-0.55	-0.6
Ebov	5117.75	5037.32	5489.17	-0.02	0.1	0.12
Marv	5716.54	4477.4	4034.28	-0.35	-0.5	-0.15