CCNE1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
CCNE1 cyce1, A8K684, CCNE, CCNE1_HUMAN, NM_001238, NP_001229, P24864, Q14091, Q8NFG1, Q92501, Q9UD21 cyclin E1 NM_001238 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens cyclin E1 (CCNE1) protein encoded by this gene belongs to the highly conserved cyclin family, whose members are characterized by a dramatic periodicity in protein abundance through the cell cycle. Cyclins function as regulators of CDK kinases. Different cyclins exhibit distinct expression and degradation patterns which contribute to the temporal coordination of each mitotic event. This cyclin forms a complex with and functions as a regulatory subunit of CDK2, whose activity is required for cell cycle G1/S transition. This protein accumulates at the G1-S phase boundary and is degraded as cells progress through S phase. Overexpression of this gene has been observed in many tumors, which results in chromosome instability, and thus may contribute to tumorigenesis. This protein was found to associate with, and be involved in, the phosphorylation of NPAT protein (nuclear protein mapped to the ATM locus), which participates in cell-cycle regulated histone gene expression and plays a critical role in promoting cell-cycle progression in the absence of pRB. Two alternatively spliced transcript variants of this gene, which encode distinct isoforms, have been described. Two additional splice variants were reported but detailed nucleotide sequence information is not yet available.

This gene is downregulated in all samples (very strong in HG19) and most during ebola infection.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome80 70 33 79 66 15 94 84 31
Read_Max
batR. aegyptiacusTranscriptome 95 94 40 75 59 61 62 80 83
Read_Max
bat_genomeR. aegyptiacusGenome 104 82 35 93 55 34 60 101 90
DESeq
humanH. sapiensGenome 546.96 423.23 294.88 491.49 362.76 147.07 602.76 487.01 256.53
DESeq
batR. aegyptiacusTranscriptome 445.43 429.43 228.21 363.6 370.05 321.8 417.04 353.79 364.0
DESeq
bat_genomeR. aegyptiacusGenome 801.81 747.49 517.72 871.95 742.23 642.26 806.29 737.44 744.03

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 546.96 491.49 602.76 -0.15 0.14 0.29
7h 423.23 362.76 487.01 -0.22 0.2 0.42
23h 294.88 147.07 256.53 -1.0 -0.2 0.8

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 546.96 423.23 294.88 -0.37 -0.89 -0.52
Ebov 491.49 362.76 147.07 -0.44 -1.74 -1.3
Marv 602.76 487.01 256.53 -0.31 -1.23 -0.92

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 445.43 363.6 417.04 -0.29 -0.1 0.2
7h 429.43 370.05 353.79 -0.21 -0.28 -0.06
23h 228.21 321.8 364.0 0.5 0.67 0.18

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 445.43 429.43 228.21 -0.05 -0.96 -0.91
Ebov 363.6 370.05 321.8 0.03 -0.18 -0.2
Marv 417.04 353.79 364.0 -0.24 -0.2 0.04