RBM12

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
RBM12	SWAN,HRIHFB2091, KIAA0765, SWAN	RNA binding motif protein 12	NM_006047	pdf			NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a protein that contains several RNA-binding motifs, potential transmembrane domains, and proline-rich regions. Overlaps with the gene CPNE1. Expression profile could be missleading because of exons overlapping each other. Alternative splicing, which might be particlar to different treatments.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source	Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max	H. sapiens	Genome	366	440	415	409	505	567	428	674	359
Read_Max	R. aegyptiacus	Transcriptome	235	197	162	228	197	184	170	245	257
Read_Max	R. aegyptiacus	Genome	360	333	289	284	243	149	221	428	405
DESeq	H. sapiens	Genome	6810.22	5246.21	7605.04	6417.34	5222.58	2297.28	6342.31	5581.27	6866.51
DESeq	R. aegyptiacus	Transcriptome	3218.74	2910.15	2626.08	3326.71	3125.29	2418.51	3152.45	3205.04	2677.61
DESeq	R. aegyptiacus	Genome	4994.78	5174.01	4161.85	4622.41	5048.27	3952.78	5151.48	4920.23	4215.03

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	6810.22	6417.34	6342.31	-0.09	-0.1	-0.02
7h	5246.21	5222.58	5581.27	-0.01	0.09	0.1
23h	7605.04	2297.28	6866.51	-1.73	-0.15	1.58

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	6810.22	5246.21	7605.04	-0.38	0.16	0.54
Ebov	6417.34	5222.58	2297.28	-0.3	-1.48	-1.18
Marv	6342.31	5581.27	6866.51	-0.18	0.11	0.3

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	3218.74	3326.71	3152.45	0.05	-0.03	-0.08
7h	2910.15	3125.29	3205.04	0.1	0.14	0.04
23h	2626.08	2418.51	2677.61	-0.12	0.03	0.15

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	3218.74	2910.15	2626.08	-0.15	-0.29	-0.15
Ebov	3326.71	3125.29	2418.51	-0.09	-0.46	-0.37
Marv	3152.45	3205.04	2677.61	0.02	-0.24	-0.26

Differential transcriptional responses to Ebola and Marburg virus infection in cells from bats and humans

Supplemental Material