H2AFV

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
H2AFV H2AV, H2AF/Z,MGC10170, MGC10831, MGC1947 H2A histone family, member V NM_012412 pdf NONE NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Histone which replaces H2A. There seems to be more exons than the ones included in the annotation.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome1109 962 654 897 1170 474 1184 1176 573
Read_Max
batR. aegyptiacusTranscriptome 402 472 498 480 469 433 358 524 671
Read_Max
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA
DESeq
humanH. sapiensGenome 25053.04 18624.9 16347.86 20202.5 20544.27 6322.69 20008.29 16365.3 12815.38
DESeq
batR. aegyptiacusTranscriptome 1022.61 1161.94 1559.68 1341.54 1547.27 1268.78 1319.2 1309.71 1494.13
DESeq
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 25053.04 20202.5 20008.29 -0.31 -0.32 -0.01
7h 18624.9 20544.27 16365.3 0.14 -0.19 -0.33
23h 16347.86 6322.69 12815.38 -1.37 -0.35 1.02

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 25053.04 18624.9 16347.86 -0.43 -0.62 -0.19
Ebov 20202.5 20544.27 6322.69 0.02 -1.68 -1.7
Marv 20008.29 16365.3 12815.38 -0.29 -0.64 -0.35

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1022.61 1341.54 1319.2 0.39 0.37 -0.02
7h 1161.94 1547.27 1309.71 0.41 0.17 -0.24
23h 1559.68 1268.78 1494.13 -0.3 -0.06 0.24

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1022.61 1161.94 1559.68 0.18 0.61 0.42
Ebov 1341.54 1547.27 1268.78 0.21 -0.08 -0.29
Marv 1319.2 1309.71 1494.13 -0.01 0.18 0.19