H2AFV

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
H2AFV	H2AV, H2AF/Z,MGC10170, MGC10831, MGC1947	H2A histone family, member V	NM_012412	pdf			NONE	NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Histone which replaces H2A. There seems to be more exons than the ones included in the annotation.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	1109	962	654	897	1170	474	1184	1176	573
Read_Max		R. aegyptiacus	Transcriptome	402	472	498	480	469	433	358	524	671
Read_Max		R. aegyptiacus	Genome	NA	NA	NA	NA	NA	NA	NA	NA	NA
DESeq		H. sapiens	Genome	25053.04	18624.9	16347.86	20202.5	20544.27	6322.69	20008.29	16365.3	12815.38
DESeq		R. aegyptiacus	Transcriptome	1022.61	1161.94	1559.68	1341.54	1547.27	1268.78	1319.2	1309.71	1494.13
DESeq		R. aegyptiacus	Genome	NA	NA	NA	NA	NA	NA	NA	NA	NA

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	25053.04	20202.5	20008.29	-0.31	-0.32	-0.01
7h	18624.9	20544.27	16365.3	0.14	-0.19	-0.33
23h	16347.86	6322.69	12815.38	-1.37	-0.35	1.02

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	25053.04	18624.9	16347.86	-0.43	-0.62	-0.19
Ebov	20202.5	20544.27	6322.69	0.02	-1.68	-1.7
Marv	20008.29	16365.3	12815.38	-0.29	-0.64	-0.35

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	1022.61	1341.54	1319.2	0.39	0.37	-0.02
7h	1161.94	1547.27	1309.71	0.41	0.17	-0.24
23h	1559.68	1268.78	1494.13	-0.3	-0.06	0.24

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	1022.61	1161.94	1559.68	0.18	0.61	0.42
Ebov	1341.54	1547.27	1268.78	0.21	-0.08	-0.29
Marv	1319.2	1309.71	1494.13	-0.01	0.18	0.19