AFF4

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
AFF4	AF5Q31, MCEF	AF4/FMR2 family, member 4	NM_014423	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Transcription actor without clear function. Gene is upregulated in ebola infected cells.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	280	231	262	227	333	903	256	319	281
Read_Max		R. aegyptiacus	Transcriptome	501	395	418	402	358	428	396	413	391
Read_Max		R. aegyptiacus	Genome	576	410	367	393	311	257	355	525	457
DESeq		H. sapiens	Genome	7873.72	6622.01	6987.51	7664.11	7314.3	22175.61	7160.75	6040.09	9155.37
DESeq		R. aegyptiacus	Transcriptome	8147.0	6321.24	7226.39	7591.89	7421.33	7732.17	7644.34	6499.96	5584.27
DESeq		R. aegyptiacus	Genome	13737.35	12944.61	11427.8	11505.17	13180.42	14496.58	14061.15	11258.25	10406.15

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	7873.72	7664.11	7160.75	-0.04	-0.14	-0.1
7h	6622.01	7314.3	6040.09	0.14	-0.13	-0.28
23h	6987.51	22175.61	9155.37	1.67	0.39	-1.28

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	7873.72	6622.01	6987.51	-0.25	-0.17	0.08
Ebov	7664.11	7314.3	22175.61	-0.07	1.53	1.6
Marv	7160.75	6040.09	9155.37	-0.25	0.35	0.6

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	8147.0	7591.89	7644.34	-0.1	-0.09	0.01
7h	6321.24	7421.33	6499.96	0.23	0.04	-0.19
23h	7226.39	7732.17	5584.27	0.1	-0.37	-0.47

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	8147.0	6321.24	7226.39	-0.37	-0.17	0.19
Ebov	7591.89	7421.33	7732.17	-0.03	0.03	0.06
Marv	7644.34	6499.96	5584.27	-0.23	-0.45	-0.22