AFF4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
AFF4 AF5Q31, MCEF AF4/FMR2 family, member 4 NM_014423 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Transcription actor without clear function. Gene is upregulated in ebola infected cells.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome280 231 262 227 333 903 256 319 281
Read_Max
batR. aegyptiacusTranscriptome 501 395 418 402 358 428 396 413 391
Read_Max
bat_genomeR. aegyptiacusGenome 576 410 367 393 311 257 355 525 457
DESeq
humanH. sapiensGenome 7873.72 6622.01 6987.51 7664.11 7314.3 22175.61 7160.75 6040.09 9155.37
DESeq
batR. aegyptiacusTranscriptome 8147.0 6321.24 7226.39 7591.89 7421.33 7732.17 7644.34 6499.96 5584.27
DESeq
bat_genomeR. aegyptiacusGenome 13737.35 12944.61 11427.8 11505.17 13180.42 14496.58 14061.15 11258.25 10406.15

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7873.72 7664.11 7160.75 -0.04 -0.14 -0.1
7h 6622.01 7314.3 6040.09 0.14 -0.13 -0.28
23h 6987.51 22175.61 9155.37 1.67 0.39 -1.28

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7873.72 6622.01 6987.51 -0.25 -0.17 0.08
Ebov 7664.11 7314.3 22175.61 -0.07 1.53 1.6
Marv 7160.75 6040.09 9155.37 -0.25 0.35 0.6

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8147.0 7591.89 7644.34 -0.1 -0.09 0.01
7h 6321.24 7421.33 6499.96 0.23 0.04 -0.19
23h 7226.39 7732.17 5584.27 0.1 -0.37 -0.47

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8147.0 6321.24 7226.39 -0.37 -0.17 0.19
Ebov 7591.89 7421.33 7732.17 -0.03 0.03 0.06
Marv 7644.34 6499.96 5584.27 -0.23 -0.45 -0.22