PTMA

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PTMA prothymosin, alpha pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Prothymosin alpha may mediate immune function by conferring resistance to certain opportunistic infections. Interesting progile change in ebola infected cells. Different patern in bats than in humans. However, the expression profiles can be misleading for an overlaping miRNA in one exon which could be causing the expression profiles.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2701 2487 2966 2556 2910 978 2985 2440 2644
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 2216 1590 973 2173 1098 642 1317 1933 1702
DESeq
humanH. sapiensGenome 8145.68 8243.61 7902.89 8592.63 7122.45 2755.23 8330.94 7250.31 7488.47
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 10701.12 8768.16 8483.26 12235.91 9606.56 7194.11 11860.44 8814.39 8826.48

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8145.68 8592.63 8330.94 0.08 0.03 -0.04
7h 8243.61 7122.45 7250.31 -0.21 -0.19 0.03
23h 7902.89 2755.23 7488.47 -1.52 -0.08 1.44

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8145.68 8243.61 7902.89 0.02 -0.04 -0.06
Ebov 8592.63 7122.45 2755.23 -0.27 -1.64 -1.37
Marv 8330.94 7250.31 7488.47 -0.2 -0.15 0.05

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA