WDR48

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
WDR48 p80,KIAA1449, P80, SPG60 WD repeat domain 48 NM_020839 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Regulator of deubiquitinating complexes. Alternative splicing. Differential expression in humans infected with ebola. Also between human and bats.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome315 240 216 246 409 835 336 368 185
Read_Max
batR. aegyptiacusTranscriptome 224 238 157 238 171 216 129 212 173
Read_Max
bat_genomeR. aegyptiacusGenome 185 196 118 172 116 104 93 217 168
DESeq
humanH. sapiensGenome 2567.4 2637.37 2840.48 2732.94 2986.16 8446.59 2633.49 2540.54 2811.79
DESeq
batR. aegyptiacusTranscriptome 1824.1 1737.41 1822.31 1976.1 1840.75 2096.44 1491.62 1757.52 1571.98
DESeq
bat_genomeR. aegyptiacusGenome 2416.6 2461.51 2220.4 2444.02 2337.18 2934.56 2146.73 2311.44 2094.24

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2567.4 2732.94 2633.49 0.09 0.04 -0.05
7h 2637.37 2986.16 2540.54 0.18 -0.05 -0.23
23h 2840.48 8446.59 2811.79 1.57 -0.01 -1.59

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2567.4 2637.37 2840.48 0.04 0.15 0.11
Ebov 2732.94 2986.16 8446.59 0.13 1.63 1.5
Marv 2633.49 2540.54 2811.79 -0.05 0.09 0.15

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1824.1 1976.1 1491.62 0.12 -0.29 -0.41
7h 1737.41 1840.75 1757.52 0.08 0.02 -0.07
23h 1822.31 2096.44 1571.98 0.2 -0.21 -0.42

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1824.1 1737.41 1822.31 -0.07 -0.0 0.07
Ebov 1976.1 1840.75 2096.44 -0.1 0.09 0.19
Marv 1491.62 1757.52 1571.98 0.24 0.08 -0.16