FGFR1
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| FGFR1 | BFGFR, CD331, CEK, FGFBR, FGFR-1, FLG, FLT-2, FLT2, HBGFR, HH2, HRTFDS, KAL2, N-SAM, OGD, bFGF-R-1,H2, H3, H4, H5, BFGFR | fibroblast growth factor receptor 1 | ![]() |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The protein encoded by this gene is a member of the fibroblast growth factor receptor (FGFR) family, where amino acid sequence is highly conserved between members and throughout evolution. FGFR family members differ from one another in their ligand affinities and tissue distribution. A full-length representative protein consists of an extracellular region, composed of three immunoglobulin-like domains, a single hydrophobic membrane-spanning segment and a cytoplasmic tyrosine kinase domain. The extracellular portion of the protein interacts with fibroblast growth factors, setting in motion a cascade of downstream signals, ultimately influencing mitogenesis and differentiation. This particular family member binds both acidic and basic fibroblast growth factors and is involved in limb induction. Mutations in this gene have been associated with Pfeiffer syndrome, Jackson-Weiss syndrome, Antley-Bixler syndrome, osteoglophonic dysplasia, and autosomal dominant Kallmann syndrome 2. Chromosomal aberrations involving this gene are associated with stem cell myeloproliferative disorder and stem cell leukemia lymphoma syndrome. The gene is upregulated in human MARV infection. The bat homolog is downregulated in EBOV but also in the controls.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max | H. sapiens | Genome | 80 | 92 | 77 | 70 | 88 | 73 | 81 | 117 | 156 | |
Read_Max | R. aegyptiacus | Transcriptome | 316 | 315 | 176 | 231 | 185 | 201 | 232 | 216 | 274 | |
Read_Max | R. aegyptiacus | Genome | 365 | 253 | 153 | 316 | 169 | 129 | 206 | 300 | 313 | |
DESeq | H. sapiens | Genome | 1489.69 | 1756.2 | 1823.83 | 1463.36 | 1399.28 | 1366.93 | 1467.69 | 1932.23 | 4173.15 | |
DESeq | R. aegyptiacus | Transcriptome | 3440.53 | 3814.2 | 2822.75 | 2818.51 | 2863.57 | 2957.45 | 3618.54 | 2687.0 | 3247.92 | |
DESeq | R. aegyptiacus | Genome | 4687.97 | 3760.26 | 3810.38 | 5369.94 | 4022.55 | 4358.76 | 5033.41 | 3648.34 | 4341.75 |
