FGFR1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
FGFR1 BFGFR, CD331, CEK, FGFBR, FGFR-1, FLG, FLT-2, FLT2, HBGFR, HH2, HRTFDS, KAL2, N-SAM, OGD, bFGF-R-1,H2, H3, H4, H5, BFGFR fibroblast growth factor receptor 1 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene is a member of the fibroblast growth factor receptor (FGFR) family, where amino acid sequence is highly conserved between members and throughout evolution. FGFR family members differ from one another in their ligand affinities and tissue distribution. A full-length representative protein consists of an extracellular region, composed of three immunoglobulin-like domains, a single hydrophobic membrane-spanning segment and a cytoplasmic tyrosine kinase domain. The extracellular portion of the protein interacts with fibroblast growth factors, setting in motion a cascade of downstream signals, ultimately influencing mitogenesis and differentiation. This particular family member binds both acidic and basic fibroblast growth factors and is involved in limb induction. Mutations in this gene have been associated with Pfeiffer syndrome, Jackson-Weiss syndrome, Antley-Bixler syndrome, osteoglophonic dysplasia, and autosomal dominant Kallmann syndrome 2. Chromosomal aberrations involving this gene are associated with stem cell myeloproliferative disorder and stem cell leukemia lymphoma syndrome. The gene is upregulated in human MARV infection. The bat homolog is downregulated in EBOV but also in the controls.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome80 92 77 70 88 73 81 117 156
Read_Max
batR. aegyptiacusTranscriptome 316 315 176 231 185 201 232 216 274
Read_Max
bat_genomeR. aegyptiacusGenome 365 253 153 316 169 129 206 300 313
DESeq
humanH. sapiensGenome 1489.69 1756.2 1823.83 1463.36 1399.28 1366.93 1467.69 1932.23 4173.15
DESeq
batR. aegyptiacusTranscriptome 3440.53 3814.2 2822.75 2818.51 2863.57 2957.45 3618.54 2687.0 3247.92
DESeq
bat_genomeR. aegyptiacusGenome 4687.97 3760.26 3810.38 5369.94 4022.55 4358.76 5033.41 3648.34 4341.75

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1489.69 1463.36 1467.69 -0.03 -0.02 0.0
7h 1756.2 1399.28 1932.23 -0.33 0.14 0.47
23h 1823.83 1366.93 4173.15 -0.42 1.19 1.61

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1489.69 1756.2 1823.83 0.24 0.29 0.05
Ebov 1463.36 1399.28 1366.93 -0.06 -0.1 -0.03
Marv 1467.69 1932.23 4173.15 0.4 1.51 1.11

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3440.53 2818.51 3618.54 -0.29 0.07 0.36
7h 3814.2 2863.57 2687.0 -0.41 -0.51 -0.09
23h 2822.75 2957.45 3247.92 0.07 0.2 0.14

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3440.53 3814.2 2822.75 0.15 -0.29 -0.43
Ebov 2818.51 2863.57 2957.45 0.02 0.07 0.05
Marv 3618.54 2687.0 3247.92 -0.43 -0.16 0.27