GIGYF1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GIGYF1 GYF1 GRB10 interacting GYF protein 1 NM_022574 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Specific function unclear. Seems to be needed a better annotation in bats.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome85 113 138 103 155 380 154 162 107
Read_Max
batR. aegyptiacusTranscriptome 8 5 8 7 5 7 4 6 6
Read_Max
bat_genomeR. aegyptiacusGenome 76 61 50 55 41 51 49 82 93
DESeq
humanH. sapiensGenome 2473.02 3300.29 3328.95 3104.8 3084.52 9029.54 3254.55 3346.28 2969.46
DESeq
batR. aegyptiacusTranscriptome 43.85 30.95 48.64 37.63 40.42 53.61 29.92 41.48 36.86
DESeq
bat_genomeR. aegyptiacusGenome 1546.04 1479.46 1632.38 1383.46 1348.29 2019.47 1554.1 1616.02 1654.16

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2473.02 3104.8 3254.55 0.33 0.4 0.07
7h 3300.29 3084.52 3346.28 -0.1 0.02 0.12
23h 3328.95 9029.54 2969.46 1.44 -0.16 -1.6

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2473.02 3300.29 3328.95 0.42 0.43 0.01
Ebov 3104.8 3084.52 9029.54 -0.01 1.54 1.55
Marv 3254.55 3346.28 2969.46 0.04 -0.13 -0.17

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 43.85 37.63 29.92 -0.22 -0.55 -0.33
7h 30.95 40.42 41.48 0.39 0.42 0.04
23h 48.64 53.61 36.86 0.14 -0.4 -0.54

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 43.85 30.95 48.64 -0.5 0.15 0.65
Ebov 37.63 40.42 53.61 0.1 0.51 0.41
Marv 29.92 41.48 36.86 0.47 0.3 -0.17