YTHDC1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
YTHDC1 YT521, KIAA1966, YT521-B YTH domain containing 1 NM_133370 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Function unknown related to splicing factors. Differential expression for Ebola infected cells. Differential alternative splicing expression

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome249 427 482 390 768 1220 474 653 428
Read_Max
batR. aegyptiacusTranscriptome 309 318 249 266 221 255 177 250 183
Read_Max
bat_genomeR. aegyptiacusGenome 347 283 220 315 185 145 156 310 230
DESeq
humanH. sapiensGenome 4637.56 5919.32 6367.98 6105.94 7177.73 17426.44 5972.13 6020.11 5803.08
DESeq
batR. aegyptiacusTranscriptome 2412.2 2456.3 2530.8 2216.0 2089.34 2582.76 2077.86 2225.98 1839.64
DESeq
bat_genomeR. aegyptiacusGenome 3304.35 3189.83 3451.1 3421.63 3041.46 3822.24 2962.02 3104.38 2619.95

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 4637.56 6105.94 5972.13 0.4 0.36 -0.03
7h 5919.32 7177.73 6020.11 0.28 0.02 -0.25
23h 6367.98 17426.44 5803.08 1.45 -0.13 -1.59

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 4637.56 5919.32 6367.98 0.35 0.46 0.11
Ebov 6105.94 7177.73 17426.44 0.23 1.51 1.28
Marv 5972.13 6020.11 5803.08 0.01 -0.04 -0.05

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2412.2 2216.0 2077.86 -0.12 -0.22 -0.09
7h 2456.3 2089.34 2225.98 -0.23 -0.14 0.09
23h 2530.8 2582.76 1839.64 0.03 -0.46 -0.49

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2412.2 2456.3 2530.8 0.03 0.07 0.04
Ebov 2216.0 2089.34 2582.76 -0.08 0.22 0.31
Marv 2077.86 2225.98 1839.64 0.1 -0.18 -0.28