PLOD2

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
PLOD2	LH2	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2	NM_000935	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Forms hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. differential alternative splicing. Interesting expression profile in different treatments.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	596	522	984	574	841	331	620	670	894
Read_Max		R. aegyptiacus	Transcriptome	1140	944	952	1146	992	818	857	1329	1436
Read_Max		R. aegyptiacus	Genome	1306	1222	824	925	848	497	746	1632	1639
DESeq		H. sapiens	Genome	7879.81	6584.28	11030.29	7706.31	7506.97	3693.48	7215.13	6063.27	10299.26
DESeq		R. aegyptiacus	Transcriptome	8499.02	7714.55	11812.04	10958.8	9917.04	7861.77	9322.96	10458.32	11548.03
DESeq		R. aegyptiacus	Genome	10239.63	12698.19	13184.03	9590.44	11825.44	9727.92	11469.1	12054.36	13654.55

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	7879.81	7706.31	7215.13	-0.03	-0.13	-0.1
7h	6584.28	7506.97	6063.27	0.19	-0.12	-0.31
23h	11030.29	3693.48	10299.26	-1.58	-0.1	1.48

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	7879.81	6584.28	11030.29	-0.26	0.49	0.74
Ebov	7706.31	7506.97	3693.48	-0.04	-1.06	-1.02
Marv	7215.13	6063.27	10299.26	-0.25	0.51	0.76

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	8499.02	10958.8	9322.96	0.37	0.13	-0.23
7h	7714.55	9917.04	10458.32	0.36	0.44	0.08
23h	11812.04	7861.77	11548.03	-0.59	-0.03	0.55

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	8499.02	7714.55	11812.04	-0.14	0.47	0.61
Ebov	10958.8	9917.04	7861.77	-0.14	-0.48	-0.34
Marv	9322.96	10458.32	11548.03	0.17	0.31	0.14