PLOD2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PLOD2 LH2 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 NM_000935 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Forms hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. differential alternative splicing. Interesting expression profile in different treatments.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome596 522 984 574 841 331 620 670 894
Read_Max
batR. aegyptiacusTranscriptome 1140 944 952 1146 992 818 857 1329 1436
Read_Max
bat_genomeR. aegyptiacusGenome 1306 1222 824 925 848 497 746 1632 1639
DESeq
humanH. sapiensGenome 7879.81 6584.28 11030.29 7706.31 7506.97 3693.48 7215.13 6063.27 10299.26
DESeq
batR. aegyptiacusTranscriptome 8499.02 7714.55 11812.04 10958.8 9917.04 7861.77 9322.96 10458.32 11548.03
DESeq
bat_genomeR. aegyptiacusGenome 10239.63 12698.19 13184.03 9590.44 11825.44 9727.92 11469.1 12054.36 13654.55

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 7879.81 7706.31 7215.13 -0.03 -0.13 -0.1
7h 6584.28 7506.97 6063.27 0.19 -0.12 -0.31
23h 11030.29 3693.48 10299.26 -1.58 -0.1 1.48

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 7879.81 6584.28 11030.29 -0.26 0.49 0.74
Ebov 7706.31 7506.97 3693.48 -0.04 -1.06 -1.02
Marv 7215.13 6063.27 10299.26 -0.25 0.51 0.76

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8499.02 10958.8 9322.96 0.37 0.13 -0.23
7h 7714.55 9917.04 10458.32 0.36 0.44 0.08
23h 11812.04 7861.77 11548.03 -0.59 -0.03 0.55

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8499.02 7714.55 11812.04 -0.14 0.47 0.61
Ebov 10958.8 9917.04 7861.77 -0.14 -0.48 -0.34
Marv 9322.96 10458.32 11548.03 0.17 0.31 0.14