LDHA

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
LDHA LDH-M lactate dehydrogenase A NM_005566 pdf NONE NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene catalyzes the conversion of L-lactate and NAD to pyruvate and NADH in the final step of anaerobic glycolysis. The human genome contains several non-transcribed pseudogenes of this gene. Possible alternative splicing. The gene seems to miss a downstream section.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome1706 1825 1580 1684 1731 749 2119 2362 1516
Read_Max
batR. aegyptiacusTranscriptome 1787 1587 1040 1272 1168 1373 1289 1424 1544
Read_Max
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA
DESeq
humanH. sapiensGenome 11346.32 9880.51 13385.27 10658.4 10467.74 4729.11 10389.74 9833.01 13914.69
DESeq
batR. aegyptiacusTranscriptome 10273.4 10147.16 9741.53 8805.15 9276.41 10764.33 11095.03 9331.37 11210.39
DESeq
bat_genomeR. aegyptiacusGenome NA NA NA NA NA NA NA NA NA

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 11346.32 10658.4 10389.74 -0.09 -0.13 -0.04
7h 9880.51 10467.74 9833.01 0.08 -0.01 -0.09
23h 13385.27 4729.11 13914.69 -1.5 0.06 1.56

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 11346.32 9880.51 13385.27 -0.2 0.24 0.44
Ebov 10658.4 10467.74 4729.11 -0.03 -1.17 -1.15
Marv 10389.74 9833.01 13914.69 -0.08 0.42 0.5

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 10273.4 8805.15 11095.03 -0.22 0.11 0.33
7h 10147.16 9276.41 9331.37 -0.13 -0.12 0.01
23h 9741.53 10764.33 11210.39 0.14 0.2 0.06

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 10273.4 10147.16 9741.53 -0.02 -0.08 -0.06
Ebov 8805.15 9276.41 10764.33 0.08 0.29 0.21
Marv 11095.03 9331.37 11210.39 -0.25 0.01 0.26