TRIO

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
TRIO	ARHGEF23	trio Rho guanine nucleotide exchange factor	NM_007118	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Triple functional domain protein. Promotes the exchange of GDP by GTP. Might have an interesting expression for ebola infected cells.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	78	74	68	68	107	162	94	89	93
Read_Max		R. aegyptiacus	Transcriptome	241	201	146	150	154	286	164	177	222
Read_Max		R. aegyptiacus	Genome	333	179	159	257	185	206	189	303	324
DESeq		H. sapiens	Genome	2802.83	3562.4	3284.27	3111.64	3652.77	8929.53	2978.23	3376.66	4188.37
DESeq		R. aegyptiacus	Transcriptome	6291.97	5724.89	4562.22	4744.16	5358.18	7076.46	5752.14	4316.29	4703.43
DESeq		R. aegyptiacus	Genome	11306.99	8587.45	9345.75	11267.19	10069.76	13965.28	11019.29	7989.72	10020.01

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	2802.83	3111.64	2978.23	0.15	0.09	-0.06
7h	3562.4	3652.77	3376.66	0.04	-0.08	-0.11
23h	3284.27	8929.53	4188.37	1.44	0.35	-1.09

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	2802.83	3562.4	3284.27	0.35	0.23	-0.12
Ebov	3111.64	3652.77	8929.53	0.23	1.52	1.29
Marv	2978.23	3376.66	4188.37	0.18	0.49	0.31

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	6291.97	4744.16	5752.14	-0.41	-0.13	0.28
7h	5724.89	5358.18	4316.29	-0.1	-0.41	-0.31
23h	4562.22	7076.46	4703.43	0.63	0.04	-0.59

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	6291.97	5724.89	4562.22	-0.14	-0.46	-0.33
Ebov	4744.16	5358.18	7076.46	0.18	0.58	0.4
Marv	5752.14	4316.29	4703.43	-0.41	-0.29	0.12