TRIO

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TRIO ARHGEF23 trio Rho guanine nucleotide exchange factor NM_007118 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Triple functional domain protein. Promotes the exchange of GDP by GTP. Might have an interesting expression for ebola infected cells.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome78 74 68 68 107 162 94 89 93
Read_Max
batR. aegyptiacusTranscriptome 241 201 146 150 154 286 164 177 222
Read_Max
bat_genomeR. aegyptiacusGenome 333 179 159 257 185 206 189 303 324
DESeq
humanH. sapiensGenome 2802.83 3562.4 3284.27 3111.64 3652.77 8929.53 2978.23 3376.66 4188.37
DESeq
batR. aegyptiacusTranscriptome 6291.97 5724.89 4562.22 4744.16 5358.18 7076.46 5752.14 4316.29 4703.43
DESeq
bat_genomeR. aegyptiacusGenome 11306.99 8587.45 9345.75 11267.19 10069.76 13965.28 11019.29 7989.72 10020.01

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 2802.83 3111.64 2978.23 0.15 0.09 -0.06
7h 3562.4 3652.77 3376.66 0.04 -0.08 -0.11
23h 3284.27 8929.53 4188.37 1.44 0.35 -1.09

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 2802.83 3562.4 3284.27 0.35 0.23 -0.12
Ebov 3111.64 3652.77 8929.53 0.23 1.52 1.29
Marv 2978.23 3376.66 4188.37 0.18 0.49 0.31

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6291.97 4744.16 5752.14 -0.41 -0.13 0.28
7h 5724.89 5358.18 4316.29 -0.1 -0.41 -0.31
23h 4562.22 7076.46 4703.43 0.63 0.04 -0.59

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6291.97 5724.89 4562.22 -0.14 -0.46 -0.33
Ebov 4744.16 5358.18 7076.46 0.18 0.58 0.4
Marv 5752.14 4316.29 4703.43 -0.41 -0.29 0.12