RBM33

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RBM33 PRR8,DKFZp686F102, MGC20460, DKFZp434D1319 RNA binding motif protein 33 NM_001008408 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The RNA binding motif protein 33 is involved in poly(A) RNA binding. It seems to be slightly upregulated with the time in humans with ebola infection. Stable in bats.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome115 119 161 124 181 444 131 136 153
Read_Max
batR. aegyptiacusTranscriptome 229 167 137 179 121 232 154 215 201
Read_Max
bat_genomeR. aegyptiacusGenome 248 172 106 165 106 131 126 259 213
DESeq
humanH. sapiensGenome 3306.16 3555.26 4539.2 3608.98 4082.01 10366.52 3127.36 3500.56 3857.82
DESeq
batR. aegyptiacusTranscriptome 1940.88 1737.41 1764.9 1623.56 1709.34 2448.03 1640.69 1628.63 1822.14
DESeq
bat_genomeR. aegyptiacusGenome 2354.73 1921.2 2207.01 2146.79 2113.96 2883.65 2069.14 2068.8 2243.22

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3306.16 3608.98 3127.36 0.13 -0.08 -0.21
7h 3555.26 4082.01 3500.56 0.2 -0.02 -0.22
23h 4539.2 10366.52 3857.82 1.19 -0.23 -1.43

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3306.16 3555.26 4539.2 0.1 0.46 0.35
Ebov 3608.98 4082.01 10366.52 0.18 1.52 1.34
Marv 3127.36 3500.56 3857.82 0.16 0.3 0.14

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1940.88 1623.56 1640.69 -0.26 -0.24 0.02
7h 1737.41 1709.34 1628.63 -0.02 -0.09 -0.07
23h 1764.9 2448.03 1822.14 0.47 0.05 -0.43

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1940.88 1737.41 1764.9 -0.16 -0.14 0.02
Ebov 1623.56 1709.34 2448.03 0.07 0.59 0.52
Marv 1640.69 1628.63 1822.14 -0.01 0.15 0.16