GPATCH4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GPATCH4 GPATC4,FLJ20249, DKFZP434F1735 G patch domain containing 4 NM_017725 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The G patch domain containing 4 gene is involved in nucleic acid binding and hematopoietic progenitor cell differentiation. During Marburg virus infection, after 23 hours this gene seems to be slightly downregulated in humans and slightly upregulated in bats.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome268 379 290 317 523 885 497 585 282
Read_Max
batR. aegyptiacusTranscriptome 38 42 32 36 27 38 24 43 37
Read_Max
bat_genomeR. aegyptiacusGenome 47 26 27 34 23 22 21 39 40
DESeq
humanH. sapiensGenome 3067.69 4131.49 3230.66 4319.63 4190.14 8880.84 4506.32 4734.75 3259.78
DESeq
batR. aegyptiacusTranscriptome 184.15 202.51 234.31 140.18 142.27 287.15 180.1 154.67 196.93
DESeq
bat_genomeR. aegyptiacusGenome 210.55 141.47 266.67 209.35 151.79 300.24 202.42 153.04 210.62

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3067.69 4319.63 4506.32 0.49 0.55 0.06
7h 4131.49 4190.14 4734.75 0.02 0.2 0.18
23h 3230.66 8880.84 3259.78 1.46 0.01 -1.45

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3067.69 4131.49 3230.66 0.43 0.07 -0.35
Ebov 4319.63 4190.14 8880.84 -0.04 1.04 1.08
Marv 4506.32 4734.75 3259.78 0.07 -0.47 -0.54

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 184.15 140.18 180.1 -0.39 -0.03 0.36
7h 202.51 142.27 154.67 -0.51 -0.39 0.12
23h 234.31 287.15 196.93 0.29 -0.25 -0.54

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 184.15 202.51 234.31 0.14 0.35 0.21
Ebov 140.18 142.27 287.15 0.02 1.03 1.01
Marv 180.1 154.67 196.93 -0.22 0.13 0.35