TRIM54
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| TRIM54 | A5D8T7, MURF, MURF3, NM_187841, NP_912730, Q53SY4, Q9BYV2, Q9BYV3, RNF30, TRI54_HUMAN,MURF, MURF-3 | tripartite motif containing 54 | NM_187841 |  |
NONE |  |
 |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The protein encoded by this gene contains a RING finger motif and is highly similar to the ring finger proteins RNF28/MURF1 and RNF29/MURF2. In vitro studies demonstrated that this protein, RNF28, and RNF29 form heterodimers, which may be important for the regulation of titin kinase and microtubule-dependent signal pathways in striated muscles. Alternatively spliced transcript variants encoding distinct isoforms have been reported.
No reads mapped to the location of this gene.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 6 | 2 | 2 | 2 | 2 | 0 | 3 | 6 | 5 |
Read_Max |  | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Read_Max |  | R. aegyptiacus | Genome | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 |
DESeq | | H. sapiens | Genome | 13.18 | 7.12 | 7.95 | 7.84 | 6.69 | 1.0 | 13.28 | 24.18 | 34.71 |
DESeq | | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
DESeq | | R. aegyptiacus | Genome | 1.72 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.17 | 2.57 |