TRIM54

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
TRIM54 A5D8T7, MURF, MURF3, NM_187841, NP_912730, Q53SY4, Q9BYV2, Q9BYV3, RNF30, TRI54_HUMAN,MURF, MURF-3 tripartite motif containing 54 NM_187841 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene contains a RING finger motif and is highly similar to the ring finger proteins RNF28/MURF1 and RNF29/MURF2. In vitro studies demonstrated that this protein, RNF28, and RNF29 form heterodimers, which may be important for the regulation of titin kinase and microtubule-dependent signal pathways in striated muscles. Alternatively spliced transcript variants encoding distinct isoforms have been reported.

No reads mapped to the location of this gene.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome6 2 2 2 2 0 3 6 5
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 2 0 0 0 0 0 0 3 1
DESeq
humanH. sapiensGenome 13.18 7.12 7.95 7.84 6.69 1.0 13.28 24.18 34.71
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 1.72 0.0 0.0 0.0 0.0 0.0 0.0 3.17 2.57

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 13.18 7.84 13.28 -0.75 0.01 0.76
7h 7.12 6.69 24.18 -0.09 1.76 1.85
23h 7.95 1.0 34.71 -2.99 2.13 5.12

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 13.18 7.12 7.95 -0.89 -0.73 0.16
Ebov 7.84 6.69 1.0 -0.23 -2.97 -2.74
Marv 13.28 24.18 34.71 0.86 1.39 0.52

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA