PSMA1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PSMA1 HC2, MGC14542, MGC14575, MGC14751, MGC1667, MGC21459, MGC22853, MGC23915, NU, PROS30 proteasome (prosome, macropain) subunit, alpha type, 1 NM_002786 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens proteasome (prosome, macropain) subunit, alpha type, 1 (PSMA1) mRNA seems do be not considerably altered due to Ebola or Marburg virus infection.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome598 769 791 683 1248 840 851 1085 800
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 818 794 377 737 579 322 590 1144 786
DESeq
humanH. sapiensGenome 4109.87 4050.92 4167.88 4182.74 4700.67 3103.94 4188.78 4376.64 4636.36
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 2862.63 3177.97 2441.32 3210.31 3357.33 2648.68 3472.56 3395.39 2705.57

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 4109.87 4182.74 4188.78 0.03 0.03 0.0
7h 4050.92 4700.67 4376.64 0.21 0.11 -0.1
23h 4167.88 3103.94 4636.36 -0.43 0.15 0.58

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 4109.87 4050.92 4167.88 -0.02 0.02 0.04
Ebov 4182.74 4700.67 3103.94 0.17 -0.43 -0.6
Marv 4188.78 4376.64 4636.36 0.06 0.15 0.08

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA