GAS7

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GAS7 KIAA0394, MGC1348 growth arrest-specific 7 NM_003644, NM_201432, NM_201433 pdf

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Description

Growth arrest-specific 7 is expressed primarily in terminally differentiated brain cells and predominantly in mature cerebellar Purkinje neurons. GAS7 plays a putative role in neuronal development. Several transcript variants encoding proteins which vary in the N-terminus have been described.

This gene seems generally not expressed in all of our probes.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome9 7 8 5 8 15 15 10 10
Read_Max
batR. aegyptiacusTranscriptome 28 17 9 20 16 7 11 15 9
Read_Max
bat_genomeR. aegyptiacusGenome 19 11 8 14 10 5 12 16 12
DESeq
humanH. sapiensGenome 1.0 1.0 1.0 2.14 2.63 1.0 1.0 2.6 2.09
DESeq
batR. aegyptiacusTranscriptome 89.21 63.63 54.75 53.19 80.94 26.66 58.85 49.75 40.36
DESeq
bat_genomeR. aegyptiacusGenome 254.38 128.69 95.96 220.21 133.94 88.77 283.38 123.7 66.78

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 1.0 2.14 1.0 1.1 0.0 -1.1
7h 1.0 2.63 2.6 1.4 1.38 -0.02
23h 1.0 1.0 2.09 0.0 1.06 1.06

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 1.0 1.0 1.0 0.0 0.0 0.0
Ebov 2.14 2.63 1.0 0.3 -1.1 -1.4
Marv 1.0 2.6 2.09 1.38 1.06 -0.32

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 89.21 53.19 58.85 -0.75 -0.6 0.15
7h 63.63 80.94 49.75 0.35 -0.36 -0.7
23h 54.75 26.66 40.36 -1.04 -0.44 0.6

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 89.21 63.63 54.75 -0.49 -0.7 -0.22
Ebov 53.19 80.94 26.66 0.61 -1.0 -1.6
Marv 58.85 49.75 40.36 -0.24 -0.54 -0.3