RAC1

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RAC1 TC-25,Ras-Related C3 Botulinum Toxin Substrate, p21-Rac1, Rac-1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) NM_018890 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene is a GTPase which belongs to the RAS superfamily of small GTP-binding proteins. Members of this superfamily appear to regulate a diverse array of cellular events, including the control of cell growth, cytoskeletal reorganization, and the activation of protein kinases. Two transcript variants encoding different isoforms have been found for this gene.

The gene is highly expressed in all conditions. There are about 300 reads in the third intron of the bat cells transcript.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome1498 1100 949 1196 1302 1579 1367 1220 1137
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 1320 1023 628 949 693 600 951 1265 1331
DESeq
humanH. sapiensGenome 6572.76 4477.22 4646.43 5128.37 4412.07 6700.36 5065.98 3887.44 5902.03
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 9100.94 7307.87 6580.86 8898.21 7616.5 8528.24 9862.15 7058.01 7375.24

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6572.76 5128.37 5065.98 -0.36 -0.38 -0.02
7h 4477.22 4412.07 3887.44 -0.02 -0.2 -0.18
23h 4646.43 6700.36 5902.03 0.53 0.35 -0.18

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6572.76 4477.22 4646.43 -0.55 -0.5 0.05
Ebov 5128.37 4412.07 6700.36 -0.22 0.39 0.6
Marv 5065.98 3887.44 5902.03 -0.38 0.22 0.6

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA