IFIT5

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
IFIT5 RI58 interferon-induced protein with tetratricopeptide repeats 5 NM_012420 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Homo sapiens interferon-induced protein with tetratricopeptide repeats 5 (IFIT5), mRNA.

This gene is downregulated more than 2-fold exclusively in human cells Ebola virus infected cells. A bat cells homologue was found but did not show significant expression changes.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome59 45 39 38 41 15 50 55 36
Read_Max
batR. aegyptiacusTranscriptome 504 410 378 547 402 456 467 557 580
Read_Max
bat_genomeR. aegyptiacusGenome 545 542 323 386 334 271 394 666 632
DESeq
humanH. sapiensGenome 577.4 382.43 434.86 466.4 359.51 64.16 452.76 371.9 322.85
DESeq
batR. aegyptiacusTranscriptome 3547.23 3105.3 3253.95 3679.24 3706.78 3266.7 4041.26 3629.71 3213.81
DESeq
bat_genomeR. aegyptiacusGenome 3400.61 3399.75 2801.72 3205.37 3420.95 3139.51 3899.88 3318.48 2978.69

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 577.4 466.4 452.76 -0.31 -0.35 -0.04
7h 382.43 359.51 371.9 -0.09 -0.04 0.05
23h 434.86 64.16 322.85 -2.76 -0.43 2.33

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 577.4 382.43 434.86 -0.59 -0.41 0.19
Ebov 466.4 359.51 64.16 -0.38 -2.86 -2.49
Marv 452.76 371.9 322.85 -0.28 -0.49 -0.2

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3547.23 3679.24 4041.26 0.05 0.19 0.14
7h 3105.3 3706.78 3629.71 0.26 0.23 -0.03
23h 3253.95 3266.7 3213.81 0.01 -0.02 -0.02

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3547.23 3105.3 3253.95 -0.19 -0.12 0.07
Ebov 3679.24 3706.78 3266.7 0.01 -0.17 -0.18
Marv 4041.26 3629.71 3213.81 -0.15 -0.33 -0.18