GAS8
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| GAS8 | GAS11 | growth arrest-specific 8 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene includes 11 exons spanning 25 kb and maps to a region of chromosome 16 that is sometimes deleted in breast and prostrate cancer. The second intron contains an apparently intronless gene, C16orf3, that is transcribed in the opposite orientation. This gene is a putative tumor suppressor gene. Several transcript variants encoding different isoforms have been found for this gene.
GAS8 was expressed in human cells as well as bat cells cells to similar levels in all samples. C16orf3 was expressed to a lower level in human cells.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 25 | 35 | 40 | 31 | 58 | 60 | 48 | 52 | 35 |
Read_Max |  | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Read_Max |  | R. aegyptiacus | Genome | 105 | 108 | 83 | 87 | 84 | 62 | 46 | 158 | 162 |
DESeq | | H. sapiens | Genome | 371.4 | 441.59 | 503.37 | 402.52 | 446.5 | 570.79 | 448.37 | 513.38 | 423.98 |
DESeq | | R. aegyptiacus | Transcriptome | NA | NA | NA | NA | NA | NA | NA | NA | NA |
DESeq | | R. aegyptiacus | Genome | 1044.16 | 1248.55 | 1304.34 | 1061.54 | 1113.9 | 967.31 | 901.87 | 1263.16 | 1292.85 |