GAS8

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
GAS8 GAS11 growth arrest-specific 8 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene includes 11 exons spanning 25 kb and maps to a region of chromosome 16 that is sometimes deleted in breast and prostrate cancer. The second intron contains an apparently intronless gene, C16orf3, that is transcribed in the opposite orientation. This gene is a putative tumor suppressor gene. Several transcript variants encoding different isoforms have been found for this gene.

GAS8 was expressed in human cells as well as bat cells cells to similar levels in all samples. C16orf3 was expressed to a lower level in human cells.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome25 35 40 31 58 60 48 52 35
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 105 108 83 87 84 62 46 158 162
DESeq
humanH. sapiensGenome 371.4 441.59 503.37 402.52 446.5 570.79 448.37 513.38 423.98
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 1044.16 1248.55 1304.34 1061.54 1113.9 967.31 901.87 1263.16 1292.85

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 371.4 402.52 448.37 0.12 0.27 0.16
7h 441.59 446.5 513.38 0.02 0.22 0.2
23h 503.37 570.79 423.98 0.18 -0.25 -0.43

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 371.4 441.59 503.37 0.25 0.44 0.19
Ebov 402.52 446.5 570.79 0.15 0.5 0.35
Marv 448.37 513.38 423.98 0.2 -0.08 -0.28

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA