PPP1CC

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
PPP1CC PP1C, PP1gamma protein phosphatase 1, catalytic subunit, gamma isozyme pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene belongs to the protein phosphatase family, PP1 subfamily. PP1 is an ubiquitous serine/threonine phosphatase that regulates many cellular processes, including cell division. It is expressed in mammalian cells as three closely related isoforms, alpha, beta/delta and gamma, which have distinct localization patterns. This gene encodes the gamma isozyme. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.

The gene is strongly expressed (1000reads) at early time points, expression goes down two-fold at late time points.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome1047 916 923 938 1070 806 1155 1238 811
Read_Max
batR. aegyptiacusTranscriptome 950 805 482 729 676 562 771 800 597
Read_Max
bat_genomeR. aegyptiacusGenome 927 729 385 708 537 310 660 938 619
DESeq
humanH. sapiensGenome 10237.15 7917.25 10012.64 9097.95 9371.88 7713.62 9314.28 7974.52 9577.26
DESeq
batR. aegyptiacusTranscriptome 4354.61 4156.4 3101.26 4449.32 4617.9 3663.2 5397.28 4537.71 3338.01
DESeq
bat_genomeR. aegyptiacusGenome 6295.03 6488.28 4271.2 6264.6 7098.61 5572.8 8389.01 6759.86 5042.11

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 10237.15 9097.95 9314.28 -0.17 -0.14 0.03
7h 7917.25 9371.88 7974.52 0.24 0.01 -0.23
23h 10012.64 7713.62 9577.26 -0.38 -0.06 0.31

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 10237.15 7917.25 10012.64 -0.37 -0.03 0.34
Ebov 9097.95 9371.88 7713.62 0.04 -0.24 -0.28
Marv 9314.28 7974.52 9577.26 -0.22 0.04 0.26

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 4354.61 4449.32 5397.28 0.03 0.31 0.28
7h 4156.4 4617.9 4537.71 0.15 0.13 -0.03
23h 3101.26 3663.2 3338.01 0.24 0.11 -0.13

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 4354.61 4156.4 3101.26 -0.07 -0.49 -0.42
Ebov 4449.32 4617.9 3663.2 0.05 -0.28 -0.33
Marv 5397.28 4537.71 3338.01 -0.25 -0.69 -0.44