ATF4

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
ATF4 TAXREB67, CREB-2 activating transcription factor 4 NM_001675 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a transcription factor that was originally identified as a widely expressed mammalian DNA binding protein that could bind a tax-responsive enhancer element in the LTR of HTLV-1. The encoded protein was also isolated and characterized as the cAMP-response element binding protein 2 (CREB-2). The protein encoded by this gene belongs to a family of DNA-binding proteins that includes the AP-1 family of transcription factors, cAMP-response element binding proteins (CREBs) and CREB-like proteins. These transcription factors share a leucine zipper region that is involved in protein-protein interactions, located C-terminal to a stretch of basic amino acids that functions as a DNA binding domain. Two alternative transcripts encoding the same protein have been described. Two pseudogenes are located on the X chromosome at q28 in a region containing a large inverted duplication.

The gene is strongly expressed in the bat cells conditions. There are about 200 reads in upstream UTR.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome618 909 645 716 959 1193 961 1050 713
Read_Max
batR. aegyptiacusTranscriptome 747 744 1080 1172 1000 1466 677 1400 1850
Read_Max
bat_genomeR. aegyptiacusGenome 812 1198 911 678 834 877 562 1686 2010
DESeq
humanH. sapiensGenome 3297.03 5089.15 3695.3 4514.68 3968.2 6002.92 4506.32 5100.86 4558.07
DESeq
batR. aegyptiacusTranscriptome 3264.11 3491.07 5340.34 4945.61 4647.47 6087.13 3143.55 4646.77 6696.02
DESeq
bat_genomeR. aegyptiacusGenome 3897.33 5814.72 5672.61 4558.22 5422.18 6938.25 3583.88 5158.91 7177.45

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3297.03 4514.68 4506.32 0.45 0.45 -0.0
7h 5089.15 3968.2 5100.86 -0.36 0.0 0.36
23h 3695.3 6002.92 4558.07 0.7 0.3 -0.4

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3297.03 5089.15 3695.3 0.63 0.16 -0.46
Ebov 4514.68 3968.2 6002.92 -0.19 0.41 0.6
Marv 4506.32 5100.86 4558.07 0.18 0.02 -0.16

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3264.11 4945.61 3143.55 0.6 -0.05 -0.65
7h 3491.07 4647.47 4646.77 0.41 0.41 0.0
23h 5340.34 6087.13 6696.02 0.19 0.33 0.14

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3264.11 3491.07 5340.34 0.1 0.71 0.61
Ebov 4945.61 4647.47 6087.13 -0.09 0.3 0.39
Marv 3143.55 4646.77 6696.02 0.56 1.09 0.53