ATF4
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| ATF4 | TAXREB67, CREB-2 | activating transcription factor 4 | NM_001675 | ![]() |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes a transcription factor that was originally identified as a widely expressed mammalian DNA binding protein that could bind a tax-responsive enhancer element in the LTR of HTLV-1. The encoded protein was also isolated and characterized as the cAMP-response element binding protein 2 (CREB-2). The protein encoded by this gene belongs to a family of DNA-binding proteins that includes the AP-1 family of transcription factors, cAMP-response element binding proteins (CREBs) and CREB-like proteins. These transcription factors share a leucine zipper region that is involved in protein-protein interactions, located C-terminal to a stretch of basic amino acids that functions as a DNA binding domain. Two alternative transcripts encoding the same protein have been described. Two pseudogenes are located on the X chromosome at q28 in a region containing a large inverted duplication.
The gene is strongly expressed in the bat cells conditions. There are about 200 reads in upstream UTR.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max | H. sapiens | Genome | 618 | 909 | 645 | 716 | 959 | 1193 | 961 | 1050 | 713 | |
Read_Max | R. aegyptiacus | Transcriptome | 747 | 744 | 1080 | 1172 | 1000 | 1466 | 677 | 1400 | 1850 | |
Read_Max | R. aegyptiacus | Genome | 812 | 1198 | 911 | 678 | 834 | 877 | 562 | 1686 | 2010 | |
DESeq | H. sapiens | Genome | 3297.03 | 5089.15 | 3695.3 | 4514.68 | 3968.2 | 6002.92 | 4506.32 | 5100.86 | 4558.07 | |
DESeq | R. aegyptiacus | Transcriptome | 3264.11 | 3491.07 | 5340.34 | 4945.61 | 4647.47 | 6087.13 | 3143.55 | 4646.77 | 6696.02 | |
DESeq | R. aegyptiacus | Genome | 3897.33 | 5814.72 | 5672.61 | 4558.22 | 5422.18 | 6938.25 | 3583.88 | 5158.91 | 7177.45 |
