IRF7

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
IRF7 interferon regulatory factor 7 NM_001572 pdf NONE

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

IRF7 encodes interferon regulatory factor 7, a member of the interferon regulatory transcription factor (IRF) family. IRF7 has been shown to play a role in the transcriptional activation of virus-inducible cellular genes, including interferon beta chain genes. Inducible expression of IRF7 is largely restricted to lymphoid tissue. Multiple IRF7 transcript variants have been identified, although the functional consequences of these have not yet been established.

Gene seems to be not expressed in human cells cells.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome6 9 4 4 3 8 6 3 4
Read_Max
batR. aegyptiacusTranscriptome 2 2 2 NA NA NA NA NA 3
Read_Max
bat_genomeR. aegyptiacusGenome 3 3 3 2 4 2 0 3 4
DESeq
humanH. sapiensGenome 43.62 34.66 20.86 32.94 10.76 40.48 23.81 8.19 18.4
DESeq
batR. aegyptiacusTranscriptome 3.52 2.82 5.89 1.0 1.0 1.0 1.0 1.0 3.62
DESeq
bat_genomeR. aegyptiacusGenome 12.89 5.48 16.74 5.92 12.28 6.53 0.0 3.17 11.13

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 43.62 32.94 23.81 -0.41 -0.87 -0.47
7h 34.66 10.76 8.19 -1.69 -2.08 -0.39
23h 20.86 40.48 18.4 0.96 -0.18 -1.14

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 43.62 34.66 20.86 -0.33 -1.06 -0.73
Ebov 32.94 10.76 40.48 -1.61 0.3 1.91
Marv 23.81 8.19 18.4 -1.54 -0.37 1.17

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3.52 1.0 1.0 -1.82 -1.82 0.0
7h 2.82 1.0 1.0 -1.5 -1.5 0.0
23h 5.89 1.0 3.62 -2.56 -0.7 1.86

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3.52 2.82 5.89 -0.32 0.74 1.06
Ebov 1.0 1.0 1.0 0.0 0.0 0.0
Marv 1.0 1.0 3.62 0.0 1.86 1.86