STAT2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
STAT2 STAT2, ISGF-3, P113, STAT113,STAT113 signal transducer and activator of transcription 2, 113kDa NM_005419 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

The protein encoded by this gene is a member of the STAT protein family. In response to cytokines and growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo- or heterodimers that translocate to the cell nucleus where they act as transcription activators. In response to interferon (IFN), this protein forms a complex with STAT1 and IFN regulatory factor family protein p48 (ISGF3G), in which this protein acts as a transactivator, but lacks the ability to bind DNA directly. Transcription adaptor P300/CBP (EP300/CREBBP) has been shown to interact specifically with this protein, which is thought to be involved in the process of blocking IFN-alpha response by adenovirus. Multiple transcript variants encoding different isoforms have been found for this gene.

This gene is expressed in all probes in human cells and bat cells. It tends to be upregulated in the infected and non-infected probes after 7 h in human cells, but downregulated in bat cells. The exception is the the Marburg infected bat cells probe, where it is also upregulated after 7h.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome45 76 75 42 88 42 52 76 79
Read_Max
batR. aegyptiacusTranscriptome 74 71 74 67 53 50 51 84 82
Read_Max
bat_genomeR. aegyptiacusGenome 98 78 64 64 56 26 41 95 90
DESeq
humanH. sapiensGenome 992.45 1488.99 1478.32 931.8 1366.76 702.39 936.98 1366.29 1527.64
DESeq
batR. aegyptiacusTranscriptome 537.01 577.38 697.28 678.59 635.06 425.73 490.46 713.19 577.43
DESeq
bat_genomeR. aegyptiacusGenome 912.67 1204.74 1241.86 1013.16 1045.82 780.64 871.51 1195.76 1061.68

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 992.45 931.8 936.98 -0.09 -0.08 0.01
7h 1488.99 1366.76 1366.29 -0.12 -0.12 -0.0
23h 1478.32 702.39 1527.64 -1.07 0.05 1.12

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 992.45 1488.99 1478.32 0.59 0.57 -0.01
Ebov 931.8 1366.76 702.39 0.55 -0.41 -0.96
Marv 936.98 1366.29 1527.64 0.54 0.71 0.16

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 537.01 678.59 490.46 0.34 -0.13 -0.47
7h 577.38 635.06 713.19 0.14 0.3 0.17
23h 697.28 425.73 577.43 -0.71 -0.27 0.44

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 537.01 577.38 697.28 0.1 0.38 0.27
Ebov 678.59 635.06 425.73 -0.1 -0.67 -0.58
Marv 490.46 713.19 577.43 0.54 0.24 -0.3