IFIT2

Name	Synonyms	Full Name	RefSeq ID	Description (.pdf)	IGV-img (human_genome)	Sashimi-img (human_genome)	UCSC-img (human_genome)	IGV-img (bat_genome)
IFIT2	IFI-54k,IFI-54, ISG-54K, cig42, GARG-39	interferon-induced protein with tetratricopeptide repeats 2	NM_001547	pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Interferon-induced protein with tetratricopeptide repeats 2 (IFIT2). Is in a cluster of IFIT genes, might be confused with overlapping.

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source		Species	Mapping on	Mock_3h	Mock_7h	Mock_23h	EBOV_3h	EBOV_7h	EBOV_23h	MARV_3h	MARV_7h	MARV_23h
Read_Max		H. sapiens	Genome	2	3	4	2	3	0	3	6	5
Read_Max		R. aegyptiacus	Transcriptome	NA	NA	NA	NA	NA	NA	NA	NA	NA
Read_Max		R. aegyptiacus	Genome	15	13	17	10	13	13	10	23	26
DESeq		H. sapiens	Genome	10.13	17.32	19.86	11.27	10.76	1.0	16.79	12.19	22.75
DESeq		R. aegyptiacus	Transcriptome	NA	NA	NA	NA	NA	NA	NA	NA	NA
DESeq		R. aegyptiacus	Genome	85.94	115.0	179.64	110.6	158.49	241.5	93.34	152.25	247.44

Human Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	10.13	11.27	16.79	0.15	0.73	0.58
7h	17.32	10.76	12.19	-0.69	-0.51	0.18
23h	19.86	1.0	22.75	-4.31	0.2	4.51

Human Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	10.13	17.32	19.86	0.77	0.97	0.2
Ebov	11.27	10.76	1.0	-0.07	-3.49	-3.43
Marv	16.79	12.19	22.75	-0.46	0.44	0.9

Bat Condition Comparisons

	Mock	EBOV	MARV	FC_{Mock_EBOV}	FC_{Mock_MARV}	FC_{EBOV_MARV}
3h	NA	NA	NA	NA	NA	NA
7h	NA	NA	NA	NA	NA	NA
23h	NA	NA	NA	NA	NA	NA

Bat Time Point Comparisons

	3h	7h	23h	FC_{3h_7h}	FC_{3h_23h}	FC_{7h_23h}
Mock	NA	NA	NA	NA	NA	NA
Ebov	NA	NA	NA	NA	NA	NA
Marv	NA	NA	NA	NA	NA	NA