IFIT2

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
IFIT2 IFI-54k,IFI-54, ISG-54K, cig42, GARG-39 interferon-induced protein with tetratricopeptide repeats 2 NM_001547 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Interferon-induced protein with tetratricopeptide repeats 2 (IFIT2). Is in a cluster of IFIT genes, might be confused with overlapping.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome2 3 4 2 3 0 3 6 5
Read_Max
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
Read_Max
bat_genomeR. aegyptiacusGenome 15 13 17 10 13 13 10 23 26
DESeq
humanH. sapiensGenome 10.13 17.32 19.86 11.27 10.76 1.0 16.79 12.19 22.75
DESeq
batR. aegyptiacusTranscriptome NA NA NA NA NA NA NA NA NA
DESeq
bat_genomeR. aegyptiacusGenome 85.94 115.0 179.64 110.6 158.49 241.5 93.34 152.25 247.44

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 10.13 11.27 16.79 0.15 0.73 0.58
7h 17.32 10.76 12.19 -0.69 -0.51 0.18
23h 19.86 1.0 22.75 -4.31 0.2 4.51

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 10.13 17.32 19.86 0.77 0.97 0.2
Ebov 11.27 10.76 1.0 -0.07 -3.49 -3.43
Marv 16.79 12.19 22.75 -0.46 0.44 0.9

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h NA NA NA NA NA NA
7h NA NA NA NA NA NA
23h NA NA NA NA NA NA

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock NA NA NA NA NA NA
Ebov NA NA NA NA NA NA
Marv NA NA NA NA NA NA