OXSM

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
OXSM FASN2D, FLJ20604, KS,KS, FASN2D 3-oxoacyl-ACP synthase, mitochondrial NM_017897 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

This gene encodes a beta-ketoacyl synthetase. The encoded enzyme is required for elongation of fatty acid chains in the mitochondria. Alternatively spliced transcript variants have been described.

It is equally expressed in human cells and bat cells under all investigated conditions.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome53 34 50 50 52 31 63 59 46
Read_Max
batR. aegyptiacusTranscriptome 93 58 59 66 53 45 62 68 79
Read_Max
bat_genomeR. aegyptiacusGenome 112 79 52 71 53 28 67 98 100
DESeq
humanH. sapiensGenome 323.7 307.98 382.24 378.57 382.27 158.91 343.11 343.12 415.28
DESeq
batR. aegyptiacusTranscriptome 507.6 439.41 539.7 529.34 501.46 301.26 473.77 522.34 511.83
DESeq
bat_genomeR. aegyptiacusGenome 649.7 727.41 643.8 612.24 662.98 419.04 649.98 637.53 648.99

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 323.7 378.57 343.11 0.23 0.08 -0.14
7h 307.98 382.27 343.12 0.31 0.16 -0.16
23h 382.24 158.91 415.28 -1.27 0.12 1.39

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 323.7 307.98 382.24 -0.07 0.24 0.31
Ebov 378.57 382.27 158.91 0.01 -1.25 -1.27
Marv 343.11 343.12 415.28 0.0 0.28 0.28

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 507.6 529.34 473.77 0.06 -0.1 -0.16
7h 439.41 501.46 522.34 0.19 0.25 0.06
23h 539.7 301.26 511.83 -0.84 -0.08 0.76

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 507.6 439.41 539.7 -0.21 0.09 0.3
Ebov 529.34 501.46 301.26 -0.08 -0.81 -0.74
Marv 473.77 522.34 511.83 0.14 0.11 -0.03