IPO5

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
IPO5 IMB3, KPNB3, MGC2068, Pse1, RANBP5, Imp5, Kapb3, FLJ43041, DKFZp686O1576, IMB3 importin 5 NM_002271 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

Nucleocytoplasmic transport, a signal- and energy-dependent process, takes place through nuclear pore complexes embedded in the nuclear envelope. The import of proteins containing a nuclear localization signal (NLS) requires the NLS import receptor, a heterodimer of importin alpha and beta subunits also known as karyopherins. Importin alpha binds the NLS-containing cargo in the cytoplasm and importin beta docks the complex at the cytoplasmic side of the nuclear pore complex. In the presence of nucleoside triphosphates and the small GTP binding protein Ran, the complex moves into the nuclear pore complex and the importin subunits dissociate. Importin alpha enters the nucleoplasm with its passenger protein and importin beta remains at the pore. Interactions between importin beta and the FG repeats of nucleoporins are essential in translocation through the pore complex. The protein encoded by this gene is a member of the importin beta family.

This gene is highly expressed in human cells and bat cells. In human cells all sample genes are upregulated until 7 h. After 23 h the expression is downregulated, most of all during Marburg infection (2 fold decrease). In bat cells the expression level is 2 fold downregulated, except for Marburg samples, which are first upregulated.

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome713 751 577 607 816 650 816 962 469
Read_Max
batR. aegyptiacusTranscriptome 1383 1265 485 993 737 703 899 991 733
Read_Max
bat_genomeR. aegyptiacusGenome 1475 1127 548 1113 789 593 882 1621 1145
DESeq
humanH. sapiensGenome 14666.7 13151.24 13177.77 14564.1 13879.7 11798.24 14627.51 13088.77 11629.09
DESeq
batR. aegyptiacusTranscriptome 19798.91 16894.92 10953.3 16087.46 16351.79 15392.76 18641.59 16092.24 13022.79
DESeq
bat_genomeR. aegyptiacusGenome 22602.82 17657.71 11554.99 20219.71 18516.66 17543.4 21644.99 17853.18 14431.97

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 14666.7 14564.1 14627.51 -0.01 -0.0 0.01
7h 13151.24 13879.7 13088.77 0.08 -0.01 -0.08
23h 13177.77 11798.24 11629.09 -0.16 -0.18 -0.02

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 14666.7 13151.24 13177.77 -0.16 -0.15 0.0
Ebov 14564.1 13879.7 11798.24 -0.07 -0.3 -0.23
Marv 14627.51 13088.77 11629.09 -0.16 -0.33 -0.17

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 19798.91 16087.46 18641.59 -0.3 -0.09 0.21
7h 16894.92 16351.79 16092.24 -0.05 -0.07 -0.02
23h 10953.3 15392.76 13022.79 0.49 0.25 -0.24

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 19798.91 16894.92 10953.3 -0.23 -0.85 -0.63
Ebov 16087.46 16351.79 15392.76 0.02 -0.06 -0.09
Marv 18641.59 16092.24 13022.79 -0.21 -0.52 -0.31