RAB5A

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
RAB5A RAB5 RAB5A, member RAS oncogene family NM_004162 pdf

Download all snapshots for IGV, UCSC and Sashimi (zip archive)

Description

RAB5A is a member of the RAS oncogene family. It is required for the fusion of plasma membranes and early endosomes and contributes to the regulation of filopodia extension.

It is constantly expressed in both human cells and bat cells, but an upregulation in human cells 23 h after Ebola infection can be observed. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00409/snapshots//hg19.goi.00409_igv.eps % \caption\igv of gene RAB5A. % <- say something about the figure here \endfigure }

\sashimifigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00409/snapshots//hg19.goi.00409_sashimi.eps % \caption\sashimi of gene RAB5A. % <- say something about the figure here \endfigure }

\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00409/snapshots//hg19.goi.00409_ucsc.eps % \caption\ucsc of gene RAB5A. % <- say something about the figure here \endfigure }

\setcounterfigure0 \enddocument

Show legend

Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome222 203 215 268 285 530 319 268 302
Read_Max
batR. aegyptiacusTranscriptome 196 170 126 170 159 180 199 183 168
Read_Max
bat_genomeR. aegyptiacusGenome 276 232 127 197 166 149 203 313 285
DESeq
humanH. sapiensGenome 3078.85 2246.76 2900.05 2784.27 2708.13 5492.34 2780.86 2140.06 3392.43
DESeq
batR. aegyptiacusTranscriptome 958.76 860.58 705.83 927.66 950.44 1018.56 1017.74 890.83 776.87
DESeq
bat_genomeR. aegyptiacusGenome 2463.87 2390.32 1924.72 2343.3 2425.36 3008.97 3057.6 2355.84 2292.03

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 3078.85 2784.27 2780.86 -0.15 -0.15 -0.0
7h 2246.76 2708.13 2140.06 0.27 -0.07 -0.34
23h 2900.05 5492.34 3392.43 0.92 0.23 -0.7

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 3078.85 2246.76 2900.05 -0.45 -0.09 0.37
Ebov 2784.27 2708.13 5492.34 -0.04 0.98 1.02
Marv 2780.86 2140.06 3392.43 -0.38 0.29 0.66

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 958.76 927.66 1017.74 -0.05 0.09 0.13
7h 860.58 950.44 890.83 0.14 0.05 -0.09
23h 705.83 1018.56 776.87 0.53 0.14 -0.39

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 958.76 860.58 705.83 -0.16 -0.44 -0.29
Ebov 927.66 950.44 1018.56 0.03 0.13 0.1
Marv 1017.74 890.83 776.87 -0.19 -0.39 -0.2