VAPB
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| VAPB | ALS8, VAP-B, VAP-C,VAP-B, ALS8 | VAMP (vesicle-associated membrane protein)-associated protein B and C |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
The protein encoded by this gene is a type IV membrane protein found in plasma and intracellular vesicle membranes. The encoded protein is found as a homodimer and as a heterodimer with VAPA. This protein also can interact with VAMP1 and VAMP2 and may be involved in vesicle trafficking.
It is constantly expressed in both human cells and bat cells.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 162 | 190 | 194 | 175 | 295 | 203 | 235 | 258 | 150 |
Read_Max |  | R. aegyptiacus | Transcriptome | 218 | 205 | 136 | 218 | 216 | 223 | 128 | 228 | 196 |
Read_Max |  | R. aegyptiacus | Genome | 229 | 198 | 113 | 189 | 162 | 116 | 110 | 259 | 208 |
DESeq | | H. sapiens | Genome | 4204.25 | 4058.05 | 4565.01 | 4204.42 | 4271.43 | 3334.23 | 4163.34 | 3945.0 | 3447.89 |
DESeq | | R. aegyptiacus | Transcriptome | 828.54 | 975.86 | 970.9 | 1009.15 | 1068.71 | 1172.54 | 857.55 | 1014.76 | 1131.12 |
DESeq | | R. aegyptiacus | Genome | 1766.91 | 1766.96 | 1741.73 | 1741.92 | 1821.53 | 1832.8 | 1702.54 | 1726.24 | 1933.28 |