FOXP1
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| FOXP1 | 12CC4, hFKH1B, HSPC215, QRF1,QRF1, 12CC4 | forkhead box P1 | NM_032682 |  |
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Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene belongs to subfamily P of the forkhead box (FOX) transcription factor family. Forkhead box transcription factors play important roles in the regulation of tissue- and cell type-specific gene transcription during both development and adulthood. Forkhead box P1 protein contains both DNA-binding- and protein-protein binding-domains. This gene may act as a tumor suppressor as it is lost in several tumor types and maps to a chromosomal region (3p14.1) reported to contain a tumor suppressor gene(s). Alternative splicing results in multiple transcript variants encoding different isoforms.
It is constantly expressed in both species but at a distinct higher level in bat cells. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\igvfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv2.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv3.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv4.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv5.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv6.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv7.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv8.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_igv9.eps % \caption\igv of gene FOXP1. % <- say something about the figure here \endfigure }
\sashimifigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi2.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi3.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi4.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi5.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi6.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi7.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi8.eps \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_sashimi9.eps % \caption\sashimi of gene FOXP1. % <- say something about the figure here \endfigure }
\ucscfigure{ \beginfigure[H] \centering \includegraphics[width=\textwidth]../../input/holy_folders/hg19.goi.00451/snapshots//hg19.goi.00451_ucsc.eps % \caption\ucsc of gene FOXP1. % <- say something about the figure here \endfigure }
\setcounterfigure0 \enddocument
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max |  | H. sapiens | Genome | 165 | 102 | 83 | 102 | 118 | 110 | 143 | 121 | 72 |
Read_Max |  | R. aegyptiacus | Transcriptome | 243 | 206 | 113 | 178 | 152 | 210 | 220 | 217 | 214 |
Read_Max |  | R. aegyptiacus | Genome | 266 | 182 | 90 | 203 | 123 | 123 | 184 | 233 | 234 |
DESeq | | H. sapiens | Genome | 3312.25 | 2227.38 | 2083.95 | 2396.43 | 2339.05 | 2132.79 | 2272.96 | 1905.85 | 2239.85 |
DESeq | | R. aegyptiacus | Transcriptome | 2256.78 | 1911.69 | 1421.65 | 1631.81 | 1524.27 | 1839.8 | 2438.28 | 1492.31 | 1384.79 |
DESeq | | R. aegyptiacus | Genome | 3517.48 | 2596.59 | 3207.86 | 2968.38 | 2481.17 | 2691.76 | 3549.02 | 2399.45 | 2339.97 |