EP300
| Name | Synonyms | Full Name | RefSeq ID | Description (.pdf) | IGV-img (humangenome) | Sashimi-img (humangenome) | UCSC-img (humangenome) | IGV-img (batgenome) |
|---|---|---|---|---|---|---|---|---|
| EP300 | KAT3B, p300,p300, KAT3B | E1A binding protein p300 | NM_001429 | ![]() |
Download all snapshots for IGV, UCSC and Sashimi (zip archive)
Description
This gene encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. It functions as histone acetyltransferase that regulates transcription via chromatin remodeling and is important in the processes of cell proliferation and differentiation. It mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein. This gene has also been identified as a co-activator of HIF1A (hypoxia-inducible factor 1 alpha), and thus plays a role in the stimulation of hypoxia-induced genes such as VEGF. Defects in this gene are a cause of Rubinstein-Taybi syndrome and may also play a role in epithelial cancer.
The EP300 gene is highly expressed in all investigated cells of human and bats, however, 3X up-regulated in EBOV-infected human cells at 23 h p.i.. We were able to observe a miRNA in the 5'UTR and pseudogenes (RP11-12M9.3 and RP11-12M9.4) upstream of this gene being expressed (see Fig.~ reffig:ep300). Also a Y-RNA, which is, e.g., necessary for DNA-replication trough the interaction with the chromatin and initiation proteins, at position 41,461,558-41,461,650 of chromosome 22 is located in the 5'-upstream, but no expression is detected.
Maximum read counts and DESeq normalized read counts for human and bat cell lines
| Source | Species | Mapping on | Mock3h | Mock7h | Mock23h | EBOV3h | EBOV7h | EBOV23h | MARV3h | MARV7h | MARV23h | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Read_Max | H. sapiens | Genome | 169 | 192 | 226 | 160 | 230 | 695 | 177 | 206 | 184 | |
Read_Max | R. aegyptiacus | Transcriptome | 669 | 615 | 345 | 561 | 419 | 549 | 371 | 540 | 513 | |
Read_Max | R. aegyptiacus | Genome | 180 | 98 | 82 | 151 | 88 | 99 | 101 | 149 | 131 | |
DESeq | H. sapiens | Genome | 6330.23 | 5944.82 | 5236.16 | 5921.15 | 5329.89 | 16453.98 | 5721.25 | 5128.83 | 4971.26 | |
DESeq | R. aegyptiacus | Transcriptome | 8618.32 | 8791.07 | 7040.72 | 8178.83 | 7828.7 | 9387.47 | 7236.09 | 7403.0 | 7029.28 | |
DESeq | R. aegyptiacus | Genome | 1090.57 | 868.88 | 871.42 | 1181.03 | 897.37 | 1409.84 | 1068.31 | 775.5 | 964.93 |
