EP300

NameSynonymsFull NameRefSeq IDDescription (.pdf)IGV-img (humangenome)Sashimi-img (humangenome)UCSC-img (humangenome)IGV-img (batgenome)
EP300 KAT3B, p300,p300, KAT3B E1A binding protein p300 NM_001429 pdf

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Description

This gene encodes the adenovirus E1A-associated cellular p300 transcriptional co-activator protein. It functions as histone acetyltransferase that regulates transcription via chromatin remodeling and is important in the processes of cell proliferation and differentiation. It mediates cAMP-gene regulation by binding specifically to phosphorylated CREB protein. This gene has also been identified as a co-activator of HIF1A (hypoxia-inducible factor 1 alpha), and thus plays a role in the stimulation of hypoxia-induced genes such as VEGF. Defects in this gene are a cause of Rubinstein-Taybi syndrome and may also play a role in epithelial cancer.

The EP300 gene is highly expressed in all investigated cells of human and bats, however, 3X up-regulated in EBOV-infected human cells at 23 h p.i.. We were able to observe a miRNA in the 5'UTR and pseudogenes (RP11-12M9.3 and RP11-12M9.4) upstream of this gene being expressed (see Fig.~ reffig:ep300). Also a Y-RNA, which is, e.g., necessary for DNA-replication trough the interaction with the chromatin and initiation proteins, at position 41,461,558-41,461,650 of chromosome 22 is located in the 5'-upstream, but no expression is detected.

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Maximum read counts and DESeq normalized read counts for human and bat cell lines

Source Species Mapping on Mock3h Mock7h Mock23h EBOV3h EBOV7h EBOV23h MARV3h MARV7h MARV23h
Read_Max
humanH. sapiensGenome169 192 226 160 230 695 177 206 184
Read_Max
batR. aegyptiacusTranscriptome 669 615 345 561 419 549 371 540 513
Read_Max
bat_genomeR. aegyptiacusGenome 180 98 82 151 88 99 101 149 131
DESeq
humanH. sapiensGenome 6330.23 5944.82 5236.16 5921.15 5329.89 16453.98 5721.25 5128.83 4971.26
DESeq
batR. aegyptiacusTranscriptome 8618.32 8791.07 7040.72 8178.83 7828.7 9387.47 7236.09 7403.0 7029.28
DESeq
bat_genomeR. aegyptiacusGenome 1090.57 868.88 871.42 1181.03 897.37 1409.84 1068.31 775.5 964.93

Human Condition Comparisons

human Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 6330.23 5921.15 5721.25 -0.1 -0.15 -0.05
7h 5944.82 5329.89 5128.83 -0.16 -0.21 -0.06
23h 5236.16 16453.98 4971.26 1.65 -0.07 -1.73

Human Time Point Comparisons

human 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 6330.23 5944.82 5236.16 -0.09 -0.27 -0.18
Ebov 5921.15 5329.89 16453.98 -0.15 1.47 1.63
Marv 5721.25 5128.83 4971.26 -0.16 -0.2 -0.05

Bat Condition Comparisons

bat Mock EBOV MARV FCMock_EBOV FCMock_MARV FCEBOV_MARV
3h 8618.32 8178.83 7236.09 -0.08 -0.25 -0.18
7h 8791.07 7828.7 7403.0 -0.17 -0.25 -0.08
23h 7040.72 9387.47 7029.28 0.42 -0.0 -0.42

Bat Time Point Comparisons

bat 3h 7h 23h FC3h_7h FC3h_23h FC7h_23h
Mock 8618.32 8791.07 7040.72 0.03 -0.29 -0.32
Ebov 8178.83 7828.7 9387.47 -0.06 0.2 0.26
Marv 7236.09 7403.0 7029.28 0.03 -0.04 -0.07